Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002588A_C01 KMC002588A_c01
(560 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_189326.1| unknown protein; protein id: At3g26910.1 [Arabi... 54 1e-06
gb|AAM97017.1| unknown protein [Arabidopsis thaliana] gi|2319797... 54 1e-06
emb|CAD40549.1| OSJNBa0072K14.5 [Oryza sativa (japonica cultivar... 52 7e-06
ref|NP_198926.1| putative protein; protein id: At5g41100.1 [Arab... 47 1e-04
dbj|BAC42812.1| unknown protein [Arabidopsis thaliana] 47 1e-04
>ref|NP_189326.1| unknown protein; protein id: At3g26910.1 [Arabidopsis thaliana]
gi|9279681|dbj|BAB01238.1|
gb|AAB80666.1~gene_id:MDJ14.25~similar to unknown
protein [Arabidopsis thaliana]
Length = 621
Score = 54.3 bits (129), Expect = 1e-06
Identities = 31/78 (39%), Positives = 45/78 (56%), Gaps = 1/78 (1%)
Frame = -2
Query: 547 PSVVSSGASPLPTPPIMVSRSFSIPSSNQRAMALNVTNTKYLDTRQIPEKVEVAASPPLT 368
PS + ASPLP PP++V RS+SIPS NQR ++ R + + ++ ASPPLT
Sbjct: 536 PSATNIVASPLPVPPLVVPRSYSIPSRNQRVVS----------QRLVERRDDIVASPPLT 585
Query: 367 PY-ITREHPSISDLATHS 317
P ++R P + +A S
Sbjct: 586 PMSLSRPLPQATGVAQTS 603
>gb|AAM97017.1| unknown protein [Arabidopsis thaliana] gi|23197974|gb|AAN15514.1|
unknown protein [Arabidopsis thaliana]
Length = 608
Score = 54.3 bits (129), Expect = 1e-06
Identities = 31/78 (39%), Positives = 45/78 (56%), Gaps = 1/78 (1%)
Frame = -2
Query: 547 PSVVSSGASPLPTPPIMVSRSFSIPSSNQRAMALNVTNTKYLDTRQIPEKVEVAASPPLT 368
PS + ASPLP PP++V RS+SIPS NQR ++ R + + ++ ASPPLT
Sbjct: 536 PSATNIVASPLPVPPLVVPRSYSIPSRNQRVVS----------QRLVERRDDIVASPPLT 585
Query: 367 PY-ITREHPSISDLATHS 317
P ++R P + +A S
Sbjct: 586 PMSLSRPLPQATGVAQTS 603
>emb|CAD40549.1| OSJNBa0072K14.5 [Oryza sativa (japonica cultivar-group)]
Length = 624
Score = 51.6 bits (122), Expect = 7e-06
Identities = 30/57 (52%), Positives = 37/57 (64%)
Frame = -2
Query: 535 SSGASPLPTPPIMVSRSFSIPSSNQRAMALNVTNTKYLDTRQIPEKVEVAASPPLTP 365
S ASPLP PP ++RS+SIPS++QR L V K L+ R E EV +SPPLTP
Sbjct: 546 SQTASPLPRPPAAMTRSYSIPSNSQRTPILTV--NKLLEARHSRESSEV-SSPPLTP 599
>ref|NP_198926.1| putative protein; protein id: At5g41100.1 [Arabidopsis thaliana]
gi|9759156|dbj|BAB09712.1|
gb|AAB80666.1~gene_id:MEE6.17~similar to unknown protein
[Arabidopsis thaliana]
Length = 534
Score = 47.4 bits (111), Expect = 1e-04
Identities = 27/54 (50%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Frame = -2
Query: 526 ASPLPTPPIMVSRSFSIPSSNQRAMALNVTNTKYLDTRQIPEKVE--VAASPPL 371
ASPLP PP++V RS+SIPS NQRAMA + +PE+ + VA+ PPL
Sbjct: 433 ASPLPVPPLVVPRSYSIPSRNQRAMA----------QQPLPERNQNRVASPPPL 476
>dbj|BAC42812.1| unknown protein [Arabidopsis thaliana]
Length = 582
Score = 47.4 bits (111), Expect = 1e-04
Identities = 27/54 (50%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Frame = -2
Query: 526 ASPLPTPPIMVSRSFSIPSSNQRAMALNVTNTKYLDTRQIPEKVE--VAASPPL 371
ASPLP PP++V RS+SIPS NQRAMA + +PE+ + VA+ PPL
Sbjct: 504 ASPLPVPPLVVPRSYSIPSRNQRAMA----------QQPLPERNQNRVASPPPL 547
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 470,890,907
Number of Sequences: 1393205
Number of extensions: 9966111
Number of successful extensions: 21309
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 20669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21299
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
