Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002586A_C01 KMC002586A_c01
(542 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_175104.1| transcription factor, putative; protein id: At1... 39 0.053
emb|CAD45010.1| retinal pigment epithelium-specific protein [Can... 33 2.2
gb|AAC72356.1| retinal pigment epithelium-specific protein RPE65... 33 2.2
emb|CAA76290.1| retinal pigment epithelium abundant protein RPE6... 33 2.2
dbj|BAC42588.1| putative protein kinase [Arabidopsis thaliana] g... 32 6.5
>ref|NP_175104.1| transcription factor, putative; protein id: At1g44830.1
[Arabidopsis thaliana] gi|25352175|pir||D96507
hypothetical protein T12C22.10 [imported] - Arabidopsis
thaliana gi|8655993|gb|AAF78266.1|AC020576_10 Contains
similarity to RAP2.10 protein from Arabidopsis thaliana
gb|AF003103 and contains an AP2 PF|00847 domain
Length = 211
Score = 38.5 bits (88), Expect = 0.053
Identities = 27/76 (35%), Positives = 38/76 (49%), Gaps = 5/76 (6%)
Frame = -1
Query: 527 IVSSPSMD--DVSLESSFE---SMAMMEPWYSLDDLQSTKYVDQMLSASSFYDIDSTHHL 363
++SSPS D DV S ++ S++ WY+ D DQ + + T L
Sbjct: 141 LLSSPSEDLYDVVSMSQYDQQVSLSESSSWYNCFDGD-----DQFMFINGVSAPYLTTSL 195
Query: 362 FNDVYEESDIRLWNFC 315
+D +EE DIRLWNFC
Sbjct: 196 SDDFFEEGDIRLWNFC 211
>emb|CAD45010.1| retinal pigment epithelium-specific protein [Canis familiaris]
Length = 451
Score = 33.1 bits (74), Expect = 2.2
Identities = 21/75 (28%), Positives = 37/75 (49%)
Frame = -1
Query: 539 NLIIIVSSPSMDDVSLESSFESMAMMEPWYSLDDLQSTKYVDQMLSASSFYDIDSTHHLF 360
NL+ +SS S+ + FES M W + D + KY++ SSF + HH+
Sbjct: 178 NLLKFLSSWSLWGANYMDCFESNETMGVWLHIADKKRKKYLNNKYRTSSF---NLFHHI- 233
Query: 359 NDVYEESDIRLWNFC 315
+ YE+++ + + C
Sbjct: 234 -NTYEDNEFLIVDLC 247
>gb|AAC72356.1| retinal pigment epithelium-specific protein RPE65 [Canis
familiaris]
Length = 533
Score = 33.1 bits (74), Expect = 2.2
Identities = 21/75 (28%), Positives = 37/75 (49%)
Frame = -1
Query: 539 NLIIIVSSPSMDDVSLESSFESMAMMEPWYSLDDLQSTKYVDQMLSASSFYDIDSTHHLF 360
NL+ +SS S+ + FES M W + D + KY++ SSF + HH+
Sbjct: 260 NLLKFLSSWSLWGANYMDCFESNETMGVWLHIADKKRKKYLNNKYRTSSF---NLFHHI- 315
Query: 359 NDVYEESDIRLWNFC 315
+ YE+++ + + C
Sbjct: 316 -NTYEDNEFLIVDLC 329
>emb|CAA76290.1| retinal pigment epithelium abundant protein RPE65 [Canis
familiaris]
Length = 533
Score = 33.1 bits (74), Expect = 2.2
Identities = 21/75 (28%), Positives = 37/75 (49%)
Frame = -1
Query: 539 NLIIIVSSPSMDDVSLESSFESMAMMEPWYSLDDLQSTKYVDQMLSASSFYDIDSTHHLF 360
NL+ +SS S+ + FES M W + D + KY++ SSF + HH+
Sbjct: 260 NLLKFLSSWSLWGANYMDCFESNETMGVWLHIADKKRKKYLNNKYRTSSF---NLFHHI- 315
Query: 359 NDVYEESDIRLWNFC 315
+ YE+++ + + C
Sbjct: 316 -NTYEDNEFLIVDLC 329
>dbj|BAC42588.1| putative protein kinase [Arabidopsis thaliana]
gi|29028912|gb|AAO64835.1| At5g18910 [Arabidopsis
thaliana]
Length = 511
Score = 31.6 bits (70), Expect = 6.5
Identities = 14/51 (27%), Positives = 29/51 (56%)
Frame = +2
Query: 245 PLEDKQIEFLIRKKKLDLA*TPLSKSSTNECHSLHTHH*TGGGLNQYHRKK 397
P++ + + L+R + + + + +S S ++E H H HH + GG N H ++
Sbjct: 69 PIKSESDDELLRSIEAETSSSVVSTSDSSETHHHHHHHHSSGGPNNGHWRR 119
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 452,106,662
Number of Sequences: 1393205
Number of extensions: 9265160
Number of successful extensions: 19158
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 18534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19152
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
