Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002584A_C01 KMC002584A_c01
(473 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S43955 probable NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.... 33 1.5
gb|AAL37466.1|AF328922_1 putative JHP813-like protein [Helicobac... 32 3.4
pir||S34960 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain ... 32 3.4
ref|NP_200347.1| wax synthase-like protein; protein id: At5g5536... 32 4.5
pir||T14616 hypothetical protein - Trypanosoma cruzi gi|3063553|... 32 4.5
>pir||S43955 probable NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 3,
kinetoplast - Trypanosoma brucei mitochondrion
(fragment) gi|468424|gb|AAA20887.1| CR5
Length = 150
Score = 33.1 bits (74), Expect = 1.5
Identities = 31/92 (33%), Positives = 41/92 (43%), Gaps = 14/92 (15%)
Frame = -2
Query: 391 SMVSLKLREFPA*EFVIICSVGNLLHEACALDLSLISIISCFLWFNCNIYFMHVR----- 227
S++SL L F F+I+ +G L C L L C LWF+C +Y M+ R
Sbjct: 9 SLLSLFLYLFLILWFIILF-IGFFLCFLCFL-LHFFDCFRCCLWFSCGLYDMNSRLVFYT 66
Query: 226 ------GCNVFVLL---LNFSLTRFSFVIFYF 158
C FVLL + L F V+FYF
Sbjct: 67 LDLCFVSCLFFVLLNSIICVLLFVFVIVLFYF 98
>gb|AAL37466.1|AF328922_1 putative JHP813-like protein [Helicobacter pylori]
Length = 72
Score = 32.0 bits (71), Expect = 3.4
Identities = 18/62 (29%), Positives = 34/62 (54%)
Frame = +3
Query: 42 DVDSNVLKHVKNNGAYGVKSPRVPKNYNELGLISTHDTAK*KITKENRVREKFSSNTNTL 221
+VD VL+ V+N+ + + R NY+ LI + T K ++E+ ++++ + N T
Sbjct: 6 EVDDKVLREVRNHCRHSLTGYRDGINYSISNLIENNPTQKPLTSQEDLLKQQENLNEITQ 65
Query: 222 QP 227
QP
Sbjct: 66 QP 67
>pir||S34960 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Crithidia
oncopelti mitochondrion gi|12882|emb|CAA39492.1| NADH
dehydrogenase subunit 5 [Crithidia oncopelti]
Length = 590
Score = 32.0 bits (71), Expect = 3.4
Identities = 21/71 (29%), Positives = 28/71 (38%)
Frame = -2
Query: 274 SCFLWFNCNIYFMHVRGCNVFVLLLNFSLTRFSFVIFYFAVSCVLIKPNSL*FLGTRGLF 95
SC LWF C Y + C + ++ +F L F FV +F V+
Sbjct: 381 SCSLWFLCGFYCKDLLLCTLMLVSFHFIL-EFLFVCIFFIFFTVIYN------------- 426
Query: 94 TPYAPLFFTCF 62
Y LFF CF
Sbjct: 427 --YFLLFFLCF 435
>ref|NP_200347.1| wax synthase-like protein; protein id: At5g55360.1 [Arabidopsis
thaliana] gi|9758168|dbj|BAB08553.1| wax synthase-like
protein [Arabidopsis thaliana]
Length = 342
Score = 31.6 bits (70), Expect = 4.5
Identities = 21/68 (30%), Positives = 31/68 (44%), Gaps = 13/68 (19%)
Frame = -2
Query: 295 LSLISIISCFLWFNCNIYFMHVRGCNVFVL--LLNFSLTRFSF-----------VIFYFA 155
LS++ + + FL F ++H GC F L L NF L FSF + +
Sbjct: 37 LSVLPVCALFLVFPLFFSYVHFSGCMAFFLSWLANFKLILFSFDQGPLSPLPRTLSRFIC 96
Query: 154 VSCVLIKP 131
++C IKP
Sbjct: 97 ITCFPIKP 104
>pir||T14616 hypothetical protein - Trypanosoma cruzi gi|3063553|gb|AAC14089.1|
TcC31.35 [Trypanosoma cruzi]
Length = 560
Score = 31.6 bits (70), Expect = 4.5
Identities = 20/58 (34%), Positives = 28/58 (47%), Gaps = 2/58 (3%)
Frame = -2
Query: 301 LDLSLISIISCFLWFNCNIYFMHVRGCNVFVLLLNFSLTRF--SFVIFYFAVSCVLIK 134
L L S++ C L F C++ + C FV L FSLT F +F F CV ++
Sbjct: 31 LVLVAASLVLCRLLFCCHLCAFFLLSCFFFVRFLFFSLTLFLCRLCLFVFWWKCVRVR 88
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 350,137,988
Number of Sequences: 1393205
Number of extensions: 6564656
Number of successful extensions: 15638
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 15253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15625
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12815311608
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
