Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002580A_C01 KMC002580A_c01
(565 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG13584.1|AC037425_15 hypothetical protein [Oryza sativa] 141 5e-33
ref|NP_565716.1| expressed protein; protein id: At2g31160.1, sup... 141 6e-33
ref|NP_563780.1| expressed protein; protein id: At1g07090.1, sup... 135 3e-31
dbj|BAB68109.1| B1088C09.17 [Oryza sativa (japonica cultivar-gro... 129 3e-29
ref|NP_198201.1| putative protein; protein id: At5g28490.1 [Arab... 126 2e-28
>gb|AAG13584.1|AC037425_15 hypothetical protein [Oryza sativa]
Length = 204
Score = 141 bits (356), Expect = 5e-33
Identities = 62/75 (82%), Positives = 72/75 (95%)
Frame = -2
Query: 564 PCPCPLRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDSQAKARGISY 385
PCPCPLRQAWGSLDAL+GRLRAA+EENGG+PE NPFGARAVRLYLREVR+ QA+ARG+SY
Sbjct: 104 PCPCPLRQAWGSLDALVGRLRAAYEENGGRPENNPFGARAVRLYLREVREHQARARGVSY 163
Query: 384 EKKKRKRPPHPTTTS 340
EKKKRK+PPHP++ +
Sbjct: 164 EKKKRKKPPHPSSAA 178
>ref|NP_565716.1| expressed protein; protein id: At2g31160.1, supported by cDNA:
gi_15912210, supported by cDNA: gi_19547988 [Arabidopsis
thaliana] gi|25408134|pir||C84717 hypothetical protein
At2g31160 [imported] - Arabidopsis thaliana
gi|3746060|gb|AAC63835.1| expressed protein [Arabidopsis
thaliana] gi|15912211|gb|AAL08239.1| At2g31160/T16B12.3
[Arabidopsis thaliana] gi|19547989|gb|AAL87358.1|
At2g31160/T16B12.3 [Arabidopsis thaliana]
Length = 219
Score = 141 bits (355), Expect = 6e-33
Identities = 69/93 (74%), Positives = 75/93 (80%)
Frame = -2
Query: 564 PCPCPLRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDSQAKARGISY 385
PCPCPLRQAWGSLDALIGRLRAAFEENGGKPE NPFGARAVRLYLREVRD Q+KARG+SY
Sbjct: 118 PCPCPLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYLREVRDMQSKARGVSY 177
Query: 384 EKKKRKRPPHPTTTSCGVATIKWSKSNSLVSSS 286
EKKKRKRP ++TS A + L +S
Sbjct: 178 EKKKRKRPLPSSSTSSSSAVASHQQFQMLPGTS 210
>ref|NP_563780.1| expressed protein; protein id: At1g07090.1, supported by cDNA:
28780. [Arabidopsis thaliana] gi|25341953|pir||G86205
hypothetical protein [imported] - Arabidopsis thaliana
gi|8954037|gb|AAF82211.1|AC067971_19 Strong similarity
to an unknown protein At2g31160 gi|3746060 from
Arabidopsis thaliana BAC F7F1 gb|AC005311. EST
gb|AI998165 comes from this gene
gi|21555695|gb|AAM63916.1| unknown [Arabidopsis
thaliana] gi|28392914|gb|AAO41893.1| unknown protein
[Arabidopsis thaliana]
Length = 196
Score = 135 bits (341), Expect = 3e-31
Identities = 64/84 (76%), Positives = 73/84 (86%)
Frame = -2
Query: 564 PCPCPLRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDSQAKARGISY 385
PC CPL+QAWGSLDALIGRLRAA+EENGG+P++NPF ARAVR+YLREVR+SQAKARGI Y
Sbjct: 95 PCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRIYLREVRESQAKARGIPY 154
Query: 384 EKKKRKRPPHPTTTSCGVATIKWS 313
EKKKRKRPP TT VA+ + S
Sbjct: 155 EKKKRKRPPTVTTVRVDVASSRQS 178
>dbj|BAB68109.1| B1088C09.17 [Oryza sativa (japonica cultivar-group)]
Length = 212
Score = 129 bits (323), Expect = 3e-29
Identities = 60/67 (89%), Positives = 64/67 (94%)
Frame = -2
Query: 564 PCPCPLRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDSQAKARGISY 385
PCPCPLRQAWGSLDALIGRLRAA+EE+GG PE+NPF ARAVR+YLREVRDSQAKARGI Y
Sbjct: 95 PCPCPLRQAWGSLDALIGRLRAAYEESGGTPESNPFAARAVRIYLREVRDSQAKARGIPY 154
Query: 384 EKKKRKR 364
EKKKRKR
Sbjct: 155 EKKKRKR 161
>ref|NP_198201.1| putative protein; protein id: At5g28490.1 [Arabidopsis thaliana]
Length = 190
Score = 126 bits (316), Expect = 2e-28
Identities = 57/66 (86%), Positives = 64/66 (96%)
Frame = -2
Query: 564 PCPCPLRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDSQAKARGISY 385
PCPCPLRQAWGSLDALIGRLRAA+EENGG PEANPFG+RAVRL+LREVRD QAKARG+SY
Sbjct: 89 PCPCPLRQAWGSLDALIGRLRAAYEENGGPPEANPFGSRAVRLFLREVRDFQAKARGVSY 148
Query: 384 EKKKRK 367
EKK+++
Sbjct: 149 EKKRKR 154
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 545,852,088
Number of Sequences: 1393205
Number of extensions: 12705429
Number of successful extensions: 88216
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 67454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85686
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
