Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002579A_C01 KMC002579A_c01
(800 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_198752.1| putative protein; protein id: At5g39360.1, supp... 147 1e-34
ref|NP_197048.1| putative protein; protein id: At5g15440.1 [Arab... 135 7e-31
ref|NP_567137.1| putative protein; protein id: At3g63060.1, supp... 87 2e-16
pir||T48095 hypothetical protein T20O10.160 - Arabidopsis thalia... 87 2e-16
gb|AAK56924.1|AF368237_1 circadian clock coupling factor ZGT [Ni... 86 5e-16
>ref|NP_198752.1| putative protein; protein id: At5g39360.1, supported by cDNA:
gi_18700136 [Arabidopsis thaliana]
gi|10177684|dbj|BAB11010.1|
emb|CAB87751.1~gene_id:MUL8.4~similar to unknown protein
[Arabidopsis thaliana] gi|18700137|gb|AAL77680.1|
AT5g39360/MUL8_40 [Arabidopsis thaliana]
gi|22137234|gb|AAM91462.1| AT5g39360/MUL8_40
[Arabidopsis thaliana]
Length = 249
Score = 147 bits (372), Expect = 1e-34
Identities = 67/85 (78%), Positives = 75/85 (87%)
Frame = -3
Query: 798 IFKSFATSNVRRMLINKGAQLHPTEVCPYCKAKLWSMLLANMIPKSASCRLGSYEECVEY 619
IFKSF+ S VR++LI KG HPTEVCPYCKAKLWSML A MIP+SASCRLG+YE+ +EY
Sbjct: 163 IFKSFSMSKVRKLLIKKGTPFHPTEVCPYCKAKLWSMLQAKMIPQSASCRLGAYEDSIEY 222
Query: 618 YVCLNGHMLGICTLLPLSDSEEASE 544
YVCLNGHMLG+CTLLPLSDSE ASE
Sbjct: 223 YVCLNGHMLGVCTLLPLSDSEGASE 247
>ref|NP_197048.1| putative protein; protein id: At5g15440.1 [Arabidopsis thaliana]
gi|11358131|pir||T51522 hypothetical protein T20K14_50 -
Arabidopsis thaliana gi|9755799|emb|CAC01743.1| putative
protein [Arabidopsis thaliana]
Length = 293
Score = 135 bits (340), Expect = 7e-31
Identities = 61/91 (67%), Positives = 74/91 (81%)
Frame = -3
Query: 798 IFKSFATSNVRRMLINKGAQLHPTEVCPYCKAKLWSMLLANMIPKSASCRLGSYEECVEY 619
IFKSF TS VR+++INK HP+EVCPYCKAKLWSML A +IP+SA RL +YE+C+EY
Sbjct: 163 IFKSFPTSKVRKVIINKAVPFHPSEVCPYCKAKLWSMLQAKIIPQSACIRLEAYEDCIEY 222
Query: 618 YVCLNGHMLGICTLLPLSDSEEASEKE*DIH 526
+VCLNGH+LGICTL PLSDSE+A E + H
Sbjct: 223 FVCLNGHLLGICTLAPLSDSEDAIPSEDNNH 253
>ref|NP_567137.1| putative protein; protein id: At3g63060.1, supported by cDNA:
gi_15810464 [Arabidopsis thaliana]
gi|15810465|gb|AAL07120.1| unknown protein [Arabidopsis
thaliana]
Length = 272
Score = 87.4 bits (215), Expect = 2e-16
Identities = 39/89 (43%), Positives = 57/89 (63%)
Frame = -3
Query: 798 IFKSFATSNVRRMLINKGAQLHPTEVCPYCKAKLWSMLLANMIPKSASCRLGSYEECVEY 619
+F+ F S R L+ + A L CPYC ++WSM A ++PKSA+ RLGS E +E+
Sbjct: 177 VFREFMRSKTRECLVRRQAALEEKVRCPYCGGRVWSMTAARLVPKSAARRLGSREGGLEF 236
Query: 618 YVCLNGHMLGICTLLPLSDSEEASEKE*D 532
+VC+NGH+ G C L+PLS EE + ++ D
Sbjct: 237 FVCVNGHLHGTCWLIPLSSEEEDNGEDDD 265
>pir||T48095 hypothetical protein T20O10.160 - Arabidopsis thaliana
gi|7573435|emb|CAB87751.1| putative protein [Arabidopsis
thaliana]
Length = 377
Score = 87.4 bits (215), Expect = 2e-16
Identities = 39/89 (43%), Positives = 57/89 (63%)
Frame = -3
Query: 798 IFKSFATSNVRRMLINKGAQLHPTEVCPYCKAKLWSMLLANMIPKSASCRLGSYEECVEY 619
+F+ F S R L+ + A L CPYC ++WSM A ++PKSA+ RLGS E +E+
Sbjct: 177 VFREFMRSKTRECLVRRQAALEEKVRCPYCGGRVWSMTAARLVPKSAARRLGSREGGLEF 236
Query: 618 YVCLNGHMLGICTLLPLSDSEEASEKE*D 532
+VC+NGH+ G C L+PLS EE + ++ D
Sbjct: 237 FVCVNGHLHGTCWLIPLSSEEEDNGEDDD 265
>gb|AAK56924.1|AF368237_1 circadian clock coupling factor ZGT [Nicotiana tabacum]
Length = 291
Score = 86.3 bits (212), Expect = 5e-16
Identities = 41/86 (47%), Positives = 56/86 (64%)
Frame = -3
Query: 798 IFKSFATSNVRRMLINKGAQLHPTEVCPYCKAKLWSMLLANMIPKSASCRLGSYEECVEY 619
+F F S R LI + +L CP+C A++WSM A ++PKSA+ RLGS E +EY
Sbjct: 168 VFWGFMRSRTRACLIRRQVELEEKIKCPFCGARVWSMTAARLVPKSAARRLGSMESGLEY 227
Query: 618 YVCLNGHMLGICTLLPLSDSEEASEK 541
+VC+NGH+ G C L+PLS S+E EK
Sbjct: 228 FVCVNGHLHGACWLVPLS-SDEGEEK 252
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 663,654,906
Number of Sequences: 1393205
Number of extensions: 14215498
Number of successful extensions: 65590
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 46983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62725
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 40616159090
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
