Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002577A_C01 KMC002577A_c01
(588 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB01961.1| contains similarity to unknown protein~dbj|BAA82... 173 1e-42
ref|NP_566412.1| KH domain/zinc finger protein; protein id: At3g... 173 1e-42
dbj|BAA82391.1| ESTs C99174(E10437),D22295(C10709) correspond to... 165 4e-40
ref|NP_196295.1| KH domain/zinc finger protein; protein id: At5g... 160 1e-38
gb|AAM63810.1| unknown [Arabidopsis thaliana] 160 1e-38
>dbj|BAB01961.1| contains similarity to unknown
protein~dbj|BAA82391.1~gene_id:T23B7.7 [Arabidopsis
thaliana]
Length = 231
Score = 173 bits (439), Expect = 1e-42
Identities = 87/129 (67%), Positives = 101/129 (77%), Gaps = 3/129 (2%)
Frame = -2
Query: 584 SVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNLRNIELEGSFDQIKEASNMVK 405
SV+ASLAGAIIGKGGV+SKQICRQTG KLSI++HE DPNL+NI LEG+ +QI EAS MVK
Sbjct: 102 SVDASLAGAIIGKGGVSSKQICRQTGVKLSIQDHERDPNLKNIVLEGTLEQISEASAMVK 161
Query: 404 DLLLTLQMSA--PPKSNQGGAGGPGGHGH-HGSNNFKTKLCENFAKGTCTFGERCHFAHG 234
DL+ L +A PP GG GG G G H +NFKTK+CE F+KG CTFG+RCHFAHG
Sbjct: 162 DLIGRLNSAAKKPPGGGLGGGGGMGSEGKPHPGSNFKTKICERFSKGNCTFGDRCHFAHG 221
Query: 233 PAELRK*GV 207
AELRK G+
Sbjct: 222 EAELRKSGI 230
>ref|NP_566412.1| KH domain/zinc finger protein; protein id: At3g12130.1 [Arabidopsis
thaliana] gi|12322002|gb|AAG51040.1|AC069473_2 unknown
protein; 15726-17646 [Arabidopsis thaliana]
gi|21553871|gb|AAM62964.1| unknown [Arabidopsis
thaliana]
Length = 248
Score = 173 bits (439), Expect = 1e-42
Identities = 87/129 (67%), Positives = 101/129 (77%), Gaps = 3/129 (2%)
Frame = -2
Query: 584 SVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNLRNIELEGSFDQIKEASNMVK 405
SV+ASLAGAIIGKGGV+SKQICRQTG KLSI++HE DPNL+NI LEG+ +QI EAS MVK
Sbjct: 119 SVDASLAGAIIGKGGVSSKQICRQTGVKLSIQDHERDPNLKNIVLEGTLEQISEASAMVK 178
Query: 404 DLLLTLQMSA--PPKSNQGGAGGPGGHGH-HGSNNFKTKLCENFAKGTCTFGERCHFAHG 234
DL+ L +A PP GG GG G G H +NFKTK+CE F+KG CTFG+RCHFAHG
Sbjct: 179 DLIGRLNSAAKKPPGGGLGGGGGMGSEGKPHPGSNFKTKICERFSKGNCTFGDRCHFAHG 238
Query: 233 PAELRK*GV 207
AELRK G+
Sbjct: 239 EAELRKSGI 247
>dbj|BAA82391.1| ESTs C99174(E10437),D22295(C10709) correspond to a region of the
predicted gene.~Similar to Arabidopsis thaliana BAC
genomic sequence. (AC005314) [Oryza sativa (japonica
cultivar-group)]
Length = 300
Score = 165 bits (417), Expect = 4e-40
Identities = 83/126 (65%), Positives = 102/126 (80%), Gaps = 2/126 (1%)
Frame = -2
Query: 587 ISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNLRNIELEGSFDQIKEASNMV 408
ISV+ASLAG IIG+GGVN+KQI R TGAKL+IR+HESD NL+NIELEG+FDQIK AS MV
Sbjct: 175 ISVDASLAGGIIGRGGVNTKQISRVTGAKLAIRDHESDTNLKNIELEGTFDQIKNASAMV 234
Query: 407 KDLLLTLQMSAPPKSNQ--GGAGGPGGHGHHGSNNFKTKLCENFAKGTCTFGERCHFAHG 234
++L++++ APP+ + GG+ GG G +NFKTKLCENF KG+CTFG+RCHFAHG
Sbjct: 235 RELIVSIGGGAPPQGKKPVGGSHRGGGPG----SNFKTKLCENFTKGSCTFGDRCHFAHG 290
Query: 233 PAELRK 216
ELRK
Sbjct: 291 ENELRK 296
Score = 37.4 bits (85), Expect = 0.14
Identities = 18/32 (56%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
Frame = -2
Query: 305 KTKLCE--NFAKGTCTFGERCHFAHGPAELRK 216
KT+LC N A+G C +G++CHFAHG EL K
Sbjct: 101 KTRLCNKYNTAEG-CKWGDKCHFAHGERELGK 131
Score = 34.3 bits (77), Expect = 1.2
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
Frame = -2
Query: 389 LQMSAPPKSNQGGAGGPGGHGHHGSNNFKT------KLCENF-AKGTCTFGERCHFAH 237
+++ + GA G GG S +F+T K C F + C FGE CHF H
Sbjct: 1 MEVGGRKRGKPDGANGAGGKRARESESFQTGVGSKSKPCTKFFSTSGCPFGEGCHFLH 58
>ref|NP_196295.1| KH domain/zinc finger protein; protein id: At5g06770.1, supported
by cDNA: 27460. [Arabidopsis thaliana]
gi|9759305|dbj|BAB09811.1| contains similarity to
unknown protein~dbj|BAA82391.1~gene_id:MPH15.13
[Arabidopsis thaliana] gi|26451009|dbj|BAC42611.1|
unknown protein [Arabidopsis thaliana]
gi|28950801|gb|AAO63324.1| At5g06770 [Arabidopsis
thaliana]
Length = 240
Score = 160 bits (404), Expect = 1e-38
Identities = 78/127 (61%), Positives = 101/127 (79%)
Frame = -2
Query: 587 ISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNLRNIELEGSFDQIKEASNMV 408
ISV+ASLAGAIIGKGG++SKQICR+TGAKLSI++HE DPNL+ IELEG+F+QI AS MV
Sbjct: 118 ISVDASLAGAIIGKGGIHSKQICRETGAKLSIKDHERDPNLKIIELEGTFEQINVASGMV 177
Query: 407 KDLLLTLQMSAPPKSNQGGAGGPGGHGHHGSNNFKTKLCENFAKGTCTFGERCHFAHGPA 228
++L+ L P+ G GGP G H GS N+KTK+C+ ++KG CT+G+RCHFAHG +
Sbjct: 178 RELIGRLGSVKKPQ----GIGGPEGKPHPGS-NYKTKICDRYSKGNCTYGDRCHFAHGES 232
Query: 227 ELRK*GV 207
ELR+ G+
Sbjct: 233 ELRRSGI 239
>gb|AAM63810.1| unknown [Arabidopsis thaliana]
Length = 240
Score = 160 bits (404), Expect = 1e-38
Identities = 78/127 (61%), Positives = 101/127 (79%)
Frame = -2
Query: 587 ISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNLRNIELEGSFDQIKEASNMV 408
ISV+ASLAGAIIGKGG++SKQICR+TGAKLSI++HE DPNL+ IELEG+F+QI AS MV
Sbjct: 118 ISVDASLAGAIIGKGGIHSKQICRETGAKLSIKDHERDPNLKIIELEGTFEQINVASGMV 177
Query: 407 KDLLLTLQMSAPPKSNQGGAGGPGGHGHHGSNNFKTKLCENFAKGTCTFGERCHFAHGPA 228
++L+ L P+ G GGP G H GS N+KTK+C+ ++KG CT+G+RCHFAHG +
Sbjct: 178 RELIGRLGSVKKPQ----GIGGPEGKPHPGS-NYKTKICDRYSKGNCTYGDRCHFAHGES 232
Query: 227 ELRK*GV 207
ELR+ G+
Sbjct: 233 ELRRSGI 239
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 499,679,089
Number of Sequences: 1393205
Number of extensions: 11012699
Number of successful extensions: 58156
Number of sequences better than 10.0: 399
Number of HSP's better than 10.0 without gapping: 40763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56521
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
