Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002576A_C01 KMC002576A_c01
(342 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568804.1| membrane associated protein; protein id: At5g54... 54 7e-07
gb|AAB41326.1| membrane associated protein [Arabidopsis thaliana] 54 7e-07
pir||T05153 hypothetical protein F18E5.70 - Arabidopsis thaliana... 52 1e-06
ref|NP_567627.1| putative membrane associated protein; protein i... 52 1e-06
gb|AAM65052.1| membrane associated protein-like protein [Arabido... 45 3e-04
>ref|NP_568804.1| membrane associated protein; protein id: At5g54110.1, supported by
cDNA: gi_1800146 [Arabidopsis thaliana]
Length = 266
Score = 53.5 bits (127), Expect = 7e-07
Identities = 23/29 (79%), Positives = 28/29 (96%)
Frame = -2
Query: 341 GEGLVIDEWKERRERYLAKQQVEGVESIN 255
GEGLVIDEWKERRE+YLA+QQVE V+S++
Sbjct: 238 GEGLVIDEWKERREKYLARQQVESVDSLS 266
>gb|AAB41326.1| membrane associated protein [Arabidopsis thaliana]
Length = 265
Score = 53.5 bits (127), Expect = 7e-07
Identities = 23/29 (79%), Positives = 28/29 (96%)
Frame = -2
Query: 341 GEGLVIDEWKERRERYLAKQQVEGVESIN 255
GEGLVIDEWKERRE+YLA+QQVE V+S++
Sbjct: 237 GEGLVIDEWKERREKYLARQQVESVDSLS 265
>pir||T05153 hypothetical protein F18E5.70 - Arabidopsis thaliana
gi|3080389|emb|CAA18709.1| putative membrane associated
protein [Arabidopsis thaliana]
gi|7268942|emb|CAB81252.1| putative membrane associated
protein [Arabidopsis thaliana]
Length = 293
Score = 52.4 bits (124), Expect = 1e-06
Identities = 23/28 (82%), Positives = 26/28 (92%)
Frame = -2
Query: 341 GEGLVIDEWKERRERYLAKQQVEGVESI 258
GEGLVIDEWKERRERYLA+QQ EG +S+
Sbjct: 266 GEGLVIDEWKERRERYLAQQQGEGADSV 293
>ref|NP_567627.1| putative membrane associated protein; protein id: At4g21450.1,
supported by cDNA: 33975., supported by cDNA:
gi_17979372, supported by cDNA: gi_20465772 [Arabidopsis
thaliana] gi|17979373|gb|AAL49912.1| putative membrane
associated protein [Arabidopsis thaliana]
gi|20465773|gb|AAM20375.1| putative membrane associated
protein [Arabidopsis thaliana]
gi|21592907|gb|AAM64857.1| putative membrane associated
protein [Arabidopsis thaliana]
Length = 295
Score = 52.4 bits (124), Expect = 1e-06
Identities = 23/28 (82%), Positives = 26/28 (92%)
Frame = -2
Query: 341 GEGLVIDEWKERRERYLAKQQVEGVESI 258
GEGLVIDEWKERRERYLA+QQ EG +S+
Sbjct: 268 GEGLVIDEWKERRERYLAQQQGEGADSV 295
>gb|AAM65052.1| membrane associated protein-like protein [Arabidopsis thaliana]
Length = 287
Score = 44.7 bits (104), Expect = 3e-04
Identities = 19/21 (90%), Positives = 21/21 (99%)
Frame = -2
Query: 341 GEGLVIDEWKERRERYLAKQQ 279
GEGLVIDEWK+RRERYLA+QQ
Sbjct: 261 GEGLVIDEWKQRRERYLAQQQ 281
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 303,846,333
Number of Sequences: 1393205
Number of extensions: 6409495
Number of successful extensions: 13405
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 13178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13405
length of database: 448,689,247
effective HSP length: 89
effective length of database: 324,694,002
effective search space used: 7792656048
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
