Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002575A_C02 KMC002575A_c02
(1022 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB85255.1| putative ADP-ribosylation factor [Oryza sativa (... 368 e-101
sp|P51823|ARF_ORYSA ADP-RIBOSYLATION FACTOR gi|25294170|pir||T52... 365 e-100
dbj|BAA90347.1| unnamed protein product [Oryza sativa (japonica ... 362 5e-99
pir||T52339 ADP-ribosylation factor [imported] - pepper gi|76437... 362 5e-99
emb|CAD12855.1| ADP-ribosylation factor [Gossypium hirsutum] gi|... 361 9e-99
>dbj|BAB85255.1| putative ADP-ribosylation factor [Oryza sativa (japonica
cultivar-group)] gi|20161472|dbj|BAB90396.1|
ADP-ribosylation factor [Oryza sativa (japonica
cultivar-group)]
Length = 376
Score = 368 bits (945), Expect = e-101
Identities = 185/199 (92%), Positives = 188/199 (93%)
Frame = -3
Query: 897 GEMGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY 718
GEMGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY
Sbjct: 177 GEMGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY 236
Query: 717 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRD 538
KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RVVEARDELHRMLNEDELRD
Sbjct: 237 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRD 296
Query: 537 AVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 358
AVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA
Sbjct: 297 AVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 356
Query: 357 NKA*CFFGSLLDRLFWMQG 301
+K FGS + F G
Sbjct: 357 SKR---FGSWISEQFTSAG 372
>sp|P51823|ARF_ORYSA ADP-RIBOSYLATION FACTOR gi|25294170|pir||T52341 ADP-ribosylation
factor [imported] - rice gi|1132483|dbj|BAA04607.1|
ADP-ribosylation factor [Oryza sativa (japonica
cultivar-group)] gi|13646976|dbj|BAB41081.1|
ADP-ribosylation factor [Triticum aestivum]
gi|23304413|emb|CAD48129.2| ADP-ribosylation factor
1-like protein [Hordeum vulgare subsp. spontaneum]
Length = 181
Score = 365 bits (936), Expect = e-100
Identities = 180/181 (99%), Positives = 181/181 (99%)
Frame = -3
Query: 891 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 712
MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 711 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 532
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAV 120
Query: 531 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 352
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
Query: 351 A 349
A
Sbjct: 181 A 181
>dbj|BAA90347.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
gi|7242921|dbj|BAA92519.1| unnamed protein product
[Oryza sativa (japonica cultivar-group)]
Length = 181
Score = 362 bits (929), Expect = 5e-99
Identities = 178/181 (98%), Positives = 181/181 (99%)
Frame = -3
Query: 891 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 712
MGLTFTKLFSRLF+KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLTFTKLFSRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 711 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 532
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 531 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 352
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCAT+GEGLYEGLDWLS+NIANK
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATTGEGLYEGLDWLSSNIANK 180
Query: 351 A 349
A
Sbjct: 181 A 181
>pir||T52339 ADP-ribosylation factor [imported] - pepper
gi|7643794|gb|AAF65512.1| ADP-ribosylation factor
[Capsicum annuum]
Length = 181
Score = 362 bits (929), Expect = 5e-99
Identities = 179/181 (98%), Positives = 180/181 (98%)
Frame = -3
Query: 891 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 712
MGL+F KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLSFGKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 711 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 532
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 531 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 352
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
Query: 351 A 349
A
Sbjct: 181 A 181
>emb|CAD12855.1| ADP-ribosylation factor [Gossypium hirsutum]
gi|28300416|gb|AAO37820.1| ADP-ribosylation factor
[Gossypium hirsutum] gi|28630948|gb|AAO45616.1|
ADP-ribosylation factor 1 [Gossypium hirsutum]
gi|29028258|gb|AAO62348.1| ADP-ribosylation factor 1
[Gossypium hirsutum]
Length = 181
Score = 361 bits (927), Expect = 9e-99
Identities = 178/180 (98%), Positives = 179/180 (98%)
Frame = -3
Query: 891 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 712
MGL+F KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLSFAKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 711 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 532
ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV 120
Query: 531 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 352
LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 925,061,493
Number of Sequences: 1393205
Number of extensions: 21448598
Number of successful extensions: 64262
Number of sequences better than 10.0: 1826
Number of HSP's better than 10.0 without gapping: 59957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63828
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 59601274632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
