Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002572A_C01 KMC002572A_c01
(580 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_741059.1| Predicted CDS, putative protein family member, ... 48 1e-04
gb|AAL05844.1|AF410847_1 latency associated antigen [Ovine herpe... 47 2e-04
sp|P46061|RGP1_MOUSE Ran-GTPase activating protein 1 gi|1083497|... 47 2e-04
dbj|BAC40559.1| unnamed protein product [Mus musculus] 47 2e-04
pir||T52070 RNA1 protein homolog Fug1 [imported] - mouse gi|7222... 47 2e-04
>ref|NP_741059.1| Predicted CDS, putative protein family member, with 2 coiled coil-4
domains, nematode specific [Caenorhabditis elegans]
gi|20803824|emb|CAD31697.1| Hypothetical protein
Y54G11A.14 [Caenorhabditis elegans]
Length = 450
Score = 47.8 bits (112), Expect = 1e-04
Identities = 25/73 (34%), Positives = 34/73 (46%)
Frame = -2
Query: 411 PEDFAARVAWPGDRPTFEEGVSSHGAGPVHRDQAKGSGGDEEEETHSEDQDNEKEETDSE 232
PE R++ P G G G V D+ + DEEEE ED+D + + D E
Sbjct: 4 PEPVVMRLSLPAS------GAGRRGRGGVEEDEEEEEDEDEEEENEDEDEDEDDDNDDDE 57
Query: 231 D*GDEEEEETHSE 193
D +EEE+E E
Sbjct: 58 DDDEEEEDEDEEE 70
Score = 34.3 bits (77), Expect = 1.2
Identities = 17/46 (36%), Positives = 25/46 (53%)
Frame = -2
Query: 351 VSSHGAGPVHRDQAKGSGGDEEEETHSEDQDNEKEETDSED*GDEE 214
VS G + D +G GD++EE E+++ E+EE D D D E
Sbjct: 199 VSGVSGGAFNPDDDEGVMGDDDEEEEEEEEEEEEEEEDVADVVDAE 244
>gb|AAL05844.1|AF410847_1 latency associated antigen [Ovine herpesvirus 2]
Length = 495
Score = 46.6 bits (109), Expect = 2e-04
Identities = 21/57 (36%), Positives = 33/57 (57%)
Frame = -2
Query: 357 EGVSSHGAGPVHRDQAKGSGGDEEEETHSEDQDNEKEETDSED*GDEEEEETHSERQ 187
EG G GP ++ + G+EEEE E+++ E+EE + E+ +EEEEE E +
Sbjct: 256 EGEGPGGGGPGGEEEEEEEEGEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 312
Score = 44.3 bits (103), Expect = 0.001
Identities = 21/57 (36%), Positives = 29/57 (50%)
Frame = -2
Query: 357 EGVSSHGAGPVHRDQAKGSGGDEEEETHSEDQDNEKEETDSED*GDEEEEETHSERQ 187
EG G GP + G GG EE E++ E+EE + E+ +EEEEE E +
Sbjct: 244 EGPEGEGEGPGGEGEGPGGGGPGGEEEEEEEEGEEEEEEEEEEEEEEEEEEEEEEEE 300
Score = 44.3 bits (103), Expect = 0.001
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Frame = -2
Query: 378 GDRPTFE-EGVSSHGAGPVHRDQAKGSGGDEEEETHSEDQDNEKEETDSED*GDEEEEET 202
G+ P E EG G GP G GG+EEEE +++ E+EE + E+ +EEEEE
Sbjct: 243 GEGPEGEGEGPGGEGEGP----GGGGPGGEEEEEEEEGEEEEEEEEEEEEEEEEEEEEEE 298
Query: 201 HSERQ 187
E +
Sbjct: 299 EEEEE 303
Score = 37.4 bits (85), Expect = 0.14
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = -2
Query: 360 EEGVSSHGAGPVHRDQAKGSGGDEEEETHSEDQDNEKEETDSED*GDEEEEETHSE 193
EE G ++ + +EEEE E+++ E+EE + E+ +EEEEE E
Sbjct: 269 EEEEEEEGEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 324
>sp|P46061|RGP1_MOUSE Ran-GTPase activating protein 1 gi|1083497|pir||A36983 RNA1 homolog
fug1 - mouse gi|472852|gb|AAA17681.1| homolog of yeast
RNA1, RNA production and processing protein, Swiss Prot
Accession Number P11745
Length = 589
Score = 46.6 bits (109), Expect = 2e-04
Identities = 22/60 (36%), Positives = 32/60 (52%)
Frame = -2
Query: 360 EEGVSSHGAGPVHRDQAKGSGGDEEEETHSEDQDNEKEETDSED*GDEEEEETHSERQPP 181
+E + S V + G DE+EE E+ D E+E+ + E+ DEEEEE E +PP
Sbjct: 342 QEVMDSFNMAKVLASLSDDEGEDEDEEEEGEEDDEEEEDEEDEEDDDEEEEEQEEEEEPP 401
>dbj|BAC40559.1| unnamed protein product [Mus musculus]
Length = 589
Score = 46.6 bits (109), Expect = 2e-04
Identities = 22/60 (36%), Positives = 32/60 (52%)
Frame = -2
Query: 360 EEGVSSHGAGPVHRDQAKGSGGDEEEETHSEDQDNEKEETDSED*GDEEEEETHSERQPP 181
+E + S V + G DE+EE E+ D E+E+ + E+ DEEEEE E +PP
Sbjct: 342 QEVMDSFNMAKVLASLSDDEGEDEDEEEEGEEDDEEEEDEEDEEDDDEEEEEQEEEEEPP 401
>pir||T52070 RNA1 protein homolog Fug1 [imported] - mouse
gi|722240|gb|AAB60517.1| RNA1 homolog
Length = 589
Score = 46.6 bits (109), Expect = 2e-04
Identities = 22/60 (36%), Positives = 32/60 (52%)
Frame = -2
Query: 360 EEGVSSHGAGPVHRDQAKGSGGDEEEETHSEDQDNEKEETDSED*GDEEEEETHSERQPP 181
+E + S V + G DE+EE E+ D E+E+ + E+ DEEEEE E +PP
Sbjct: 342 QEVMDSFNMAKVLASLSDDEGEDEDEEEEGEEDDEEEEDEEDEEDDDEEEEEQEEEEEPP 401
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 547,207,964
Number of Sequences: 1393205
Number of extensions: 14860461
Number of successful extensions: 161604
Number of sequences better than 10.0: 2508
Number of HSP's better than 10.0 without gapping: 70595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124486
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21426319650
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
