Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002571A_C01 KMC002571A_c01
(503 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_243126.1| hypothetical protein XP_243126 [Rattus norvegicus] 36 0.22
ref|NP_760117.1| Outer membrane cobalamin receptor protein [Vibr... 32 3.1
gb|AAK31193.1|AF349508_1 acetamidase-A [Aspergillus ustus] 32 4.1
ref|NP_494700.1| Predicted CDS, putative protein, nematode speci... 31 7.0
pir||S72284 DNA-directed RNA polymerase (EC 2.7.7.6) beta'-2 cha... 31 7.0
>ref|XP_243126.1| hypothetical protein XP_243126 [Rattus norvegicus]
Length = 219
Score = 36.2 bits (82), Expect = 0.22
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = +2
Query: 254 THQRLHVGFSKDYVSQDPRGRKYRHTREDDKW*QQRNRCGTSFFGDERLNGFHN 415
TH L +GFS + +G+K++ +E+ KW +Q CGT+ G + F +
Sbjct: 78 THPELSLGFSDFF-----QGQKHQDQKEEQKWDEQFTNCGTNLLGTLKDTSFEH 126
>ref|NP_760117.1| Outer membrane cobalamin receptor protein [Vibrio vulnificus CMCP6]
gi|27360708|gb|AAO09644.1|AE016800_249 Outer membrane
cobalamin receptor protein [Vibrio vulnificus CMCP6]
Length = 606
Score = 32.3 bits (72), Expect = 3.1
Identities = 14/30 (46%), Positives = 19/30 (62%)
Frame = -3
Query: 447 VNLTFIFKNRLLWNPLSLSSPKNEVPHLFL 358
VNLT+ + L NP +S PKNE+P + L
Sbjct: 529 VNLTYTYTGERLGNPKEVSDPKNELPSVSL 558
>gb|AAK31193.1|AF349508_1 acetamidase-A [Aspergillus ustus]
Length = 548
Score = 32.0 bits (71), Expect = 4.1
Identities = 17/63 (26%), Positives = 29/63 (45%), Gaps = 6/63 (9%)
Frame = +3
Query: 255 PTNGYMLGFPRTMYLKT------REAESTDIHEKMTNGSNKGIGVELHFLEMKGLTDSTT 416
PT+G ++ FP+T + T E+ +TD+ + +G I V F + + T
Sbjct: 30 PTDGSVMSFPKTSGILTPDELAITESSATDLVRDLASGKITSIAVTTAFCKRAAVAHQLT 89
Query: 417 TCF 425
CF
Sbjct: 90 NCF 92
>ref|NP_494700.1| Predicted CDS, putative protein, nematode specific [Caenorhabditis
elegans] gi|25375430|pir||C88116 protein T20H12.1
[imported] - Caenorhabditis elegans
Length = 258
Score = 31.2 bits (69), Expect = 7.0
Identities = 15/48 (31%), Positives = 24/48 (49%), Gaps = 4/48 (8%)
Frame = -3
Query: 480 CNLSTVIN----SHLVNLTFIFKNRLLWNPLSLSSPKNEVPHLFLCCY 349
C+ +T++N +V+ F N+L W LSS + +V CCY
Sbjct: 12 CSFATLLNVAARPEIVHFKIYFDNQLQWMIKGLSSQRLDVQSQIFCCY 59
>pir||S72284 DNA-directed RNA polymerase (EC 2.7.7.6) beta'-2 chain - Plasmodium
falciparum plastid gi|1171589|emb|CAA64574.1| frameshift
[Plasmodium falciparum]
Length = 960
Score = 31.2 bits (69), Expect = 7.0
Identities = 20/75 (26%), Positives = 38/75 (50%)
Frame = -2
Query: 250 MWLNSLNV*ICKASLIRNH**FTNQHFF*SFDIEIISRLNYVSSLG*TIHILFV*FMESL 71
++LN + + + ++I + + FF S +I +I + Y + L I+I ++
Sbjct: 699 LYLNDITIGLQSINIIFENKNIKDNIFFISNNIYVIFYIKYYNYLNNIIYIY------NI 752
Query: 70 CNLWNCKLFLYKLNF 26
CN +N + YKLNF
Sbjct: 753 CNKYNINHYKYKLNF 767
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 402,970,456
Number of Sequences: 1393205
Number of extensions: 8232965
Number of successful extensions: 16365
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 16021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16361
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15362785481
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
