Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002567A_C01 KMC002567A_c01
(359 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_473327.1| hypothetical protein [Plasmodium falciparum 3D7... 31 3.5
ref|NP_006661.1| 5T4 oncofetal trophoblast glycoprotein [Homo sa... 30 7.7
>ref|NP_473327.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|4493979|emb|CAB39038.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 2706
Score = 31.2 bits (69), Expect = 3.5
Identities = 22/65 (33%), Positives = 29/65 (43%)
Frame = +2
Query: 38 NYSKSNSDLTNQHPTWFNNITNTTTSNLI*WFKQH*NHGTVASSKRTSSSSSFSSFSMIF 217
NYS+ N T +NNI N N F N+ +ASS R + + S S +F
Sbjct: 2474 NYSRYNDFFTMFRNNVYNNINNNNNRNNN--FNTSLNYEHIASSVRNTEIAVISEGSSMF 2531
Query: 218 XSDLS 232
SD S
Sbjct: 2532 TSDQS 2536
>ref|NP_006661.1| 5T4 oncofetal trophoblast glycoprotein [Homo sapiens]
gi|627559|pir||A53531 oncofetal trophoblast glycoprotein
5T4 precursor - human gi|435655|emb|CAA82324.1| 5T4
oncofetal antigen [Homo sapiens]
gi|3805947|emb|CAA09930.1| 5T4 oncofetal trophoblast
glycoprotein [Homo sapiens] gi|22713383|gb|AAH37161.1|
trophoblast glycoprotein [Homo sapiens]
Length = 420
Score = 30.0 bits (66), Expect = 7.7
Identities = 23/60 (38%), Positives = 28/60 (46%)
Frame = +2
Query: 152 GTVASSKRTSSSSSFSSFSMIFXSDLSKAKPL*LXYXR*N*CCLXXCVRQERDRTIILVN 331
G V+SS TSS+SSFSS + S +S PL C C E RT+ VN
Sbjct: 27 GWVSSSSPTSSASSFSSSAPFLASAVSAQPPL-------PDQCPALCECSEAARTVKCVN 79
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 252,882,079
Number of Sequences: 1393205
Number of extensions: 3932426
Number of successful extensions: 9182
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9131
length of database: 448,689,247
effective HSP length: 95
effective length of database: 316,334,772
effective search space used: 7592034528
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
