Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002565A_C01 KMC002565A_c01
(801 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P45621|GSA_SOYBN Glutamate-1-semialdehyde 2,1-aminomutase, ch... 331 9e-90
pir||S21455 glutamate-1-semialdehyde 2,1-aminomutase (EC 5.4.3.8... 310 1e-83
sp|P31593|GSA_TOBAC Glutamate-1-semialdehyde 2,1-aminomutase, ch... 310 2e-83
gb|AAO63783.1|AF366293_1 glutamate 1-semialdehyde aminotransfera... 307 1e-82
ref|NP_190442.1| glutamate-1-semialdehyde aminotransferase; prot... 306 2e-82
>sp|P45621|GSA_SOYBN Glutamate-1-semialdehyde 2,1-aminomutase, chloroplast precursor
(GSA) (Glutamate-1-semialdehyde aminotransferase)
(GSA-AT) gi|541940|pir||JQ2263 glutamate-1-semialdehyde
2,1-aminomutase (EC 5.4.3.8) precursor - soybean
gi|310567|gb|AAA33968.1| glutamate 1-semialdehyde
aminotransferase gi|747968|gb|AAC48996.1| glutamate
1-semialdehyde aminotransferase
Length = 466
Score = 331 bits (848), Expect = 9e-90
Identities = 158/180 (87%), Positives = 171/180 (94%)
Frame = -1
Query: 801 SYGGAQEYFGITPDLTTLGKIIGGGLPVGAYGGRREIMQMVAPAGPMYQAGTLSGNPLAM 622
SYGGAQEYFGITPD+TTLGKIIGGGLPVGAYGGRR+IM+ VAPAGPMYQAGTLSGNPLAM
Sbjct: 287 SYGGAQEYFGITPDITTLGKIIGGGLPVGAYGGRRDIMEKVAPAGPMYQAGTLSGNPLAM 346
Query: 621 TAGIQTLKRIKEPGTYQYLDKITGELVQGIVEAGKKAGHAICGGHIGGMFGFFFTEGPVH 442
TAGI+TL+RIKEPGTY+YLDKITGELV+GI+EAGK+AGHAICGGHI GMFGFFFTEGPV+
Sbjct: 347 TAGIETLQRIKEPGTYEYLDKITGELVEGIIEAGKRAGHAICGGHIRGMFGFFFTEGPVY 406
Query: 441 NFTDAKKSDADQFVRFFWGMLEEGVYLAPSPSEAGFTSLAHTSDDIQKTIAAAEKVFRQI 262
NF DAKKSD +F RFFWGML EGVYLAPS EAGFTSLAHTSDDI+KTIAAAEKVFR+I
Sbjct: 407 NFADAKKSDTAKFARFFWGMLAEGVYLAPSQFEAGFTSLAHTSDDIKKTIAAAEKVFREI 466
>pir||S21455 glutamate-1-semialdehyde 2,1-aminomutase (EC 5.4.3.8) - common
tobacco gi|19875|emb|CAA46787.1|
glutamate-1-semialdehyde 2,1-aminomutase [Nicotiana
tabacum]
Length = 478
Score = 310 bits (795), Expect = 1e-83
Identities = 148/180 (82%), Positives = 166/180 (92%)
Frame = -1
Query: 801 SYGGAQEYFGITPDLTTLGKIIGGGLPVGAYGGRREIMQMVAPAGPMYQAGTLSGNPLAM 622
+YGGAQEYFGITPDLTTLGKIIGGGLPVGAYGGRR+IM+MVAPAGPMYQAGTLSGNPLAM
Sbjct: 299 AYGGAQEYFGITPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAM 358
Query: 621 TAGIQTLKRIKEPGTYQYLDKITGELVQGIVEAGKKAGHAICGGHIGGMFGFFFTEGPVH 442
TAGI TLKR++ PGTY YLDKITGEL QGI++AGKK GHA+CGG+I GMFGFFF EGPV+
Sbjct: 359 TAGIHTLKRLQGPGTYDYLDKITGELTQGILDAGKKTGHAMCGGYIRGMFGFFFVEGPVN 418
Query: 441 NFTDAKKSDADQFVRFFWGMLEEGVYLAPSPSEAGFTSLAHTSDDIQKTIAAAEKVFRQI 262
NF+DAKKSD ++F RF+ GMLEEGVY APS EAGFTSLAHTS+DIQ+T+AAAEKV +QI
Sbjct: 419 NFSDAKKSDTEKFGRFYRGMLEEGVYFAPSQFEAGFTSLAHTSEDIQRTVAAAEKVLKQI 478
>sp|P31593|GSA_TOBAC Glutamate-1-semialdehyde 2,1-aminomutase, chloroplast precursor
(GSA) (Glutamate-1-semialdehyde aminotransferase)
(GSA-AT) gi|100331|pir||S21454 glutamate-1-semialdehyde
2,1-aminomutase (EC 5.4.3.8) - common tobacco
gi|19873|emb|CAA46786.1| glutamate-1-semialdehyde
2,1-aminomutase [Nicotiana tabacum]
Length = 478
Score = 310 bits (794), Expect = 2e-83
Identities = 148/180 (82%), Positives = 166/180 (92%)
Frame = -1
Query: 801 SYGGAQEYFGITPDLTTLGKIIGGGLPVGAYGGRREIMQMVAPAGPMYQAGTLSGNPLAM 622
+YGGAQEYFGITPDLTTLGKIIGGGLPVGAYGGRR+IM+MVAPAGPMYQAGTLSGNPLAM
Sbjct: 299 AYGGAQEYFGITPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAM 358
Query: 621 TAGIQTLKRIKEPGTYQYLDKITGELVQGIVEAGKKAGHAICGGHIGGMFGFFFTEGPVH 442
TAGI TLKR++ PGTY+YLDKITGEL QGI++AGKK GHA+CGG+I GMFGF F EGPV+
Sbjct: 359 TAGIHTLKRLQGPGTYEYLDKITGELTQGILDAGKKTGHAMCGGYIRGMFGFLFAEGPVN 418
Query: 441 NFTDAKKSDADQFVRFFWGMLEEGVYLAPSPSEAGFTSLAHTSDDIQKTIAAAEKVFRQI 262
NF+DAKKSD ++F RF+ GMLEEGVY APS EAGFTSLAHTS+DIQKT+AAAEKV +QI
Sbjct: 419 NFSDAKKSDTEKFGRFYRGMLEEGVYFAPSQFEAGFTSLAHTSEDIQKTVAAAEKVLKQI 478
>gb|AAO63783.1|AF366293_1 glutamate 1-semialdehyde aminotransferase [Brassica napus]
Length = 473
Score = 307 bits (786), Expect = 1e-82
Identities = 147/180 (81%), Positives = 164/180 (90%)
Frame = -1
Query: 801 SYGGAQEYFGITPDLTTLGKIIGGGLPVGAYGGRREIMQMVAPAGPMYQAGTLSGNPLAM 622
+YGGAQEYFGITPDLTTLGKIIGGGLPVGAYGGRR+IM+MVAPAGPMYQAGTLSGNPLAM
Sbjct: 294 AYGGAQEYFGITPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAM 353
Query: 621 TAGIQTLKRIKEPGTYQYLDKITGELVQGIVEAGKKAGHAICGGHIGGMFGFFFTEGPVH 442
TAGI TLKR+K+PGTY+YLDKIT EL GI+EAGKK GHA+CGG+I GMFGFFFTEGPV+
Sbjct: 354 TAGIHTLKRLKQPGTYEYLDKITKELTNGILEAGKKTGHAMCGGYISGMFGFFFTEGPVY 413
Query: 441 NFTDAKKSDADQFVRFFWGMLEEGVYLAPSPSEAGFTSLAHTSDDIQKTIAAAEKVFRQI 262
NF DAKKSD ++F RFF GMLEEGVY APS EAGFTSLAHT++D+Q TIAAAE+V +I
Sbjct: 414 NFADAKKSDTEKFGRFFRGMLEEGVYFAPSQFEAGFTSLAHTTEDVQFTIAAAERVLGRI 473
>ref|NP_190442.1| glutamate-1-semialdehyde aminotransferase; protein id: At3g48730.1
[Arabidopsis thaliana] gi|14195661|sp|Q42522|GSA2_ARATH
Glutamate-1-semialdehyde 2,1-aminomutase 2, chloroplast
precursor (GSA 2) (Glutamate-1-semialdehyde
aminotransferase 2) (GSA-AT 2) gi|11258955|pir||T46217
glutamate-1-semialdehyde aminotransferase - Arabidopsis
thaliana gi|6523104|emb|CAB62362.1|
glutamate-1-semialdehyde aminotransferase [Arabidopsis
thaliana]
Length = 472
Score = 306 bits (784), Expect = 2e-82
Identities = 147/180 (81%), Positives = 165/180 (91%)
Frame = -1
Query: 801 SYGGAQEYFGITPDLTTLGKIIGGGLPVGAYGGRREIMQMVAPAGPMYQAGTLSGNPLAM 622
+YGGAQEYFGITPDLTTLGKIIGGGLPVGAYGGRR+IM+MVAPAGPMYQAGTLSGNPLAM
Sbjct: 293 AYGGAQEYFGITPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAM 352
Query: 621 TAGIQTLKRIKEPGTYQYLDKITGELVQGIVEAGKKAGHAICGGHIGGMFGFFFTEGPVH 442
TAGI TLKR+ +PGTY+YLDKIT EL GI+EAGKK GHA+CGG+I GMFGFFFTEGPV+
Sbjct: 353 TAGIHTLKRLSQPGTYEYLDKITKELTNGILEAGKKTGHAMCGGYISGMFGFFFTEGPVY 412
Query: 441 NFTDAKKSDADQFVRFFWGMLEEGVYLAPSPSEAGFTSLAHTSDDIQKTIAAAEKVFRQI 262
+F+DAKKSD ++F +FF GMLEEGVYLAPS EAGFTSLAHTS+DIQ TIAAAEKV ++
Sbjct: 413 DFSDAKKSDTEKFGKFFRGMLEEGVYLAPSQFEAGFTSLAHTSEDIQFTIAAAEKVLSRL 472
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 734,371,604
Number of Sequences: 1393205
Number of extensions: 17808105
Number of successful extensions: 55570
Number of sequences better than 10.0: 685
Number of HSP's better than 10.0 without gapping: 48209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54548
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 40616159090
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
