Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002564A_C01 KMC002564A_c01
(516 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196298.1| putative protein; protein id: At5g06800.1 [Arab... 77 1e-13
pir||T10655 hypothetical protein T5F17.60 - Arabidopsis thaliana... 61 7e-09
ref|NP_194590.2| putative protein; protein id: At4g28610.1, supp... 61 7e-09
ref|NP_568512.2| putative protein; protein id: At5g29000.1, supp... 60 1e-08
ref|NP_680257.1| putative protein; protein id: At5g29000.2, supp... 60 1e-08
>ref|NP_196298.1| putative protein; protein id: At5g06800.1 [Arabidopsis thaliana]
gi|9759308|dbj|BAB09814.1| contains similarity to
transfactor~gene_id:MPH15.16 [Arabidopsis thaliana]
Length = 374
Score = 77.0 bits (188), Expect = 1e-13
Identities = 37/45 (82%), Positives = 40/45 (88%)
Frame = -1
Query: 516 LQLDVQRHLHEQLEIQRKLQMRIEEQGKQLKMMFDQQQKTSNSIL 382
LQLDVQRHLHEQLEIQR LQ+RIEEQGKQLKMM +QQQK S+L
Sbjct: 283 LQLDVQRHLHEQLEIQRNLQLRIEEQGKQLKMMMEQQQKNKESLL 327
>pir||T10655 hypothetical protein T5F17.60 - Arabidopsis thaliana
gi|7269716|emb|CAB81449.1| putative protein [Arabidopsis
thaliana]
Length = 422
Score = 61.2 bits (147), Expect = 7e-09
Identities = 33/58 (56%), Positives = 42/58 (71%)
Frame = -1
Query: 516 LQLDVQRHLHEQLEIQRKLQMRIEEQGKQLKMMFDQQQKTSNSILNTRNLSNTDNNDK 343
LQ++VQ+ LHEQLEIQR LQ+RIEEQGK L+MMF++Q NS L S +D+ K
Sbjct: 332 LQMEVQKQLHEQLEIQRNLQLRIEEQGKYLQMMFEKQ----NSGLTKGTASTSDSAAK 385
>ref|NP_194590.2| putative protein; protein id: At4g28610.1, supported by cDNA:
gi_19698886 [Arabidopsis thaliana]
gi|15384676|emb|CAC59689.1| phosphate starvation
response regulator 1 [Arabidopsis thaliana]
gi|19698887|gb|AAL91179.1| putative protein [Arabidopsis
thaliana] gi|25084214|gb|AAN72198.1| putative protein
[Arabidopsis thaliana]
Length = 409
Score = 61.2 bits (147), Expect = 7e-09
Identities = 33/58 (56%), Positives = 42/58 (71%)
Frame = -1
Query: 516 LQLDVQRHLHEQLEIQRKLQMRIEEQGKQLKMMFDQQQKTSNSILNTRNLSNTDNNDK 343
LQ++VQ+ LHEQLEIQR LQ+RIEEQGK L+MMF++Q NS L S +D+ K
Sbjct: 319 LQMEVQKQLHEQLEIQRNLQLRIEEQGKYLQMMFEKQ----NSGLTKGTASTSDSAAK 372
>ref|NP_568512.2| putative protein; protein id: At5g29000.1, supported by cDNA:
gi_15028280 [Arabidopsis thaliana]
Length = 370
Score = 60.5 bits (145), Expect = 1e-08
Identities = 31/71 (43%), Positives = 46/71 (64%)
Frame = -1
Query: 516 LQLDVQRHLHEQLEIQRKLQMRIEEQGKQLKMMFDQQQKTSNSILNTRNLSNTDNNDKPI 337
LQ++VQ+ LHEQLEIQR LQ++IE+QG+ L+MMF++QQK + + ++
Sbjct: 284 LQMEVQKRLHEQLEIQRSLQLQIEKQGRYLQMMFEKQQK----------IQDNKSSSSEA 333
Query: 336 SPKDVEVSISE 304
SPK S +E
Sbjct: 334 SPKQCNGSFAE 344
>ref|NP_680257.1| putative protein; protein id: At5g29000.2, supported by cDNA:
13378. [Arabidopsis thaliana] gi|26983850|gb|AAN86177.1|
unknown protein [Arabidopsis thaliana]
Length = 413
Score = 60.5 bits (145), Expect = 1e-08
Identities = 31/71 (43%), Positives = 46/71 (64%)
Frame = -1
Query: 516 LQLDVQRHLHEQLEIQRKLQMRIEEQGKQLKMMFDQQQKTSNSILNTRNLSNTDNNDKPI 337
LQ++VQ+ LHEQLEIQR LQ++IE+QG+ L+MMF++QQK + + ++
Sbjct: 327 LQMEVQKRLHEQLEIQRSLQLQIEKQGRYLQMMFEKQQK----------IQDNKSSSSEA 376
Query: 336 SPKDVEVSISE 304
SPK S +E
Sbjct: 377 SPKQCNGSFAE 387
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 394,598,467
Number of Sequences: 1393205
Number of extensions: 7585737
Number of successful extensions: 28731
Number of sequences better than 10.0: 93
Number of HSP's better than 10.0 without gapping: 26707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28489
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
