Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002563A_C01 KMC002563A_c01
(574 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA98167.1| RAB5B [Lotus japonicus] 106 2e-22
pir||T12437 small GTP-binding protein - common ice plant gi|3153... 87 1e-16
ref|NP_567008.1| Rab family GTP-binding protein (Ara6); protein ... 84 1e-15
gb|AAG42497.1|AF323991_1 small GTP-binding protein RAB5B [Oryza ... 74 1e-12
dbj|BAA84717.1| rab5B [Oryza sativa (japonica cultivar-group)] g... 73 3e-12
>emb|CAA98167.1| RAB5B [Lotus japonicus]
Length = 200
Score = 106 bits (264), Expect = 2e-22
Identities = 52/52 (100%), Positives = 52/52 (100%)
Frame = -2
Query: 573 DLLEKREVAVQDGIDYAEKNGMFFIETSAKTADNINELFEEIAKRLPRPPTT 418
DLLEKREVAVQDGIDYAEKNGMFFIETSAKTADNINELFEEIAKRLPRPPTT
Sbjct: 149 DLLEKREVAVQDGIDYAEKNGMFFIETSAKTADNINELFEEIAKRLPRPPTT 200
>pir||T12437 small GTP-binding protein - common ice plant
gi|3153154|emb|CAA06922.1| small GTP-binding protein
[Mesembryanthemum crystallinum]
Length = 201
Score = 87.4 bits (215), Expect = 1e-16
Identities = 42/48 (87%), Positives = 45/48 (93%)
Frame = -2
Query: 573 DLLEKREVAVQDGIDYAEKNGMFFIETSAKTADNINELFEEIAKRLPR 430
DL E+REV QDGI+YAEKNGMFFIETSAKTADNIN+LFEEIAKRLPR
Sbjct: 150 DLQERREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 197
>ref|NP_567008.1| Rab family GTP-binding protein (Ara6); protein id: At3g54840.1,
supported by cDNA: gi_13161380 [Arabidopsis thaliana]
gi|13160603|dbj|BAB32953.1| Ara6 [Arabidopsis thaliana]
gi|27754459|gb|AAO22677.1| putative Rab family
GTP-binding protein (Ara6) [Arabidopsis thaliana]
gi|28393957|gb|AAO42386.1| putative Rab family
GTP-binding protein (Ara6) [Arabidopsis thaliana]
Length = 202
Score = 84.0 bits (206), Expect = 1e-15
Identities = 40/49 (81%), Positives = 44/49 (89%)
Frame = -2
Query: 573 DLLEKREVAVQDGIDYAEKNGMFFIETSAKTADNINELFEEIAKRLPRP 427
DL EKREV +DG++ AEKNGMFFIETSAKTADNIN+LFEEI KRLPRP
Sbjct: 150 DLHEKREVPTEDGMELAEKNGMFFIETSAKTADNINQLFEEIGKRLPRP 198
>gb|AAG42497.1|AF323991_1 small GTP-binding protein RAB5B [Oryza sativa]
Length = 199
Score = 74.3 bits (181), Expect = 1e-12
Identities = 36/49 (73%), Positives = 41/49 (83%)
Frame = -2
Query: 573 DLLEKREVAVQDGIDYAEKNGMFFIETSAKTADNINELFEEIAKRLPRP 427
DL E R V+ Q+ +YAEKN M FIETSAKTADNIN++FEEIAKRLPRP
Sbjct: 148 DLHENRHVSSQEAQEYAEKNNMVFIETSAKTADNINQVFEEIAKRLPRP 196
>dbj|BAA84717.1| rab5B [Oryza sativa (japonica cultivar-group)]
gi|10880926|gb|AAG24438.1|AF304518_1 small GTP-binding
protein RAB5B [Oryza sativa]
Length = 199
Score = 72.8 bits (177), Expect = 3e-12
Identities = 35/49 (71%), Positives = 41/49 (83%)
Frame = -2
Query: 573 DLLEKREVAVQDGIDYAEKNGMFFIETSAKTADNINELFEEIAKRLPRP 427
DL + R V+ Q+ +YAEKN M FIETSAKTADNIN++FEEIAKRLPRP
Sbjct: 148 DLHKNRHVSSQEAQEYAEKNNMVFIETSAKTADNINQVFEEIAKRLPRP 196
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 507,508,171
Number of Sequences: 1393205
Number of extensions: 10726894
Number of successful extensions: 22718
Number of sequences better than 10.0: 771
Number of HSP's better than 10.0 without gapping: 22197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22710
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
