Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002560A_C01 KMC002560A_c01
(467 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL59937.1| unknown protein [Arabidopsis thaliana] 45 9e-06
ref|NP_564310.1| syntaxin SYP6 family; protein id: At1g28490.1, ... 45 1e-05
dbj|BAB63630.1| putative syntaxin [Oryza sativa (japonica cultiv... 40 3e-04
gb|AAF16768.1|AC010155_21 F3M18.7 [Arabidopsis thaliana] 33 1.9
dbj|BAB41163.1| hypothetical protein [Macaca fascicularis] 32 2.5
>gb|AAL59937.1| unknown protein [Arabidopsis thaliana]
Length = 245
Score = 44.7 bits (104), Expect(2) = 9e-06
Identities = 22/34 (64%), Positives = 25/34 (72%)
Frame = -2
Query: 466 IVDELGNEMDSTPNRLDFVPTQVAMVMKKD*CKG 365
I+DEL EMDST NRL+FV +V MVMKK KG
Sbjct: 190 IIDELDTEMDSTKNRLEFVQKKVGMVMKKAGAKG 223
Score = 25.4 bits (54), Expect(2) = 9e-06
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = -1
Query: 356 LMILGLLALAIFLFILVFFT 297
+MI LL L I LFILVF T
Sbjct: 226 MMICFLLVLFIILFILVFLT 245
>ref|NP_564310.1| syntaxin SYP6 family; protein id: At1g28490.1, supported by cDNA:
gi_16041649, supported by cDNA: gi_18175839 [Arabidopsis
thaliana] gi|28380156|sp|Q946Y7|SY61_ARATH Syntaxin 61
(AtSYP61) (Osmotic stess-sensitive mutant 1)
gi|16041650|gb|AAK40222.2|AF355754_1 syntaxin of plants
61 [Arabidopsis thaliana] gi|23297416|gb|AAN12965.1|
unknown protein [Arabidopsis thaliana]
Length = 245
Score = 44.7 bits (104), Expect(2) = 1e-05
Identities = 22/34 (64%), Positives = 25/34 (72%)
Frame = -2
Query: 466 IVDELGNEMDSTPNRLDFVPTQVAMVMKKD*CKG 365
I+DEL EMDST NRL+FV +V MVMKK KG
Sbjct: 190 IIDELDTEMDSTKNRLEFVQKKVGMVMKKAGAKG 223
Score = 25.0 bits (53), Expect(2) = 1e-05
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -1
Query: 356 LMILGLLALAIFLFILVFFT 297
+MI LL L I LF+LVF T
Sbjct: 226 MMICFLLVLFIILFVLVFLT 245
>dbj|BAB63630.1| putative syntaxin [Oryza sativa (japonica cultivar-group)]
Length = 270
Score = 40.0 bits (92), Expect(2) = 3e-04
Identities = 20/34 (58%), Positives = 26/34 (75%)
Frame = -2
Query: 466 IVDELGNEMDSTPNRLDFVPTQVAMVMKKD*CKG 365
I+++L EM++T NRLDFV +VAMVMKK KG
Sbjct: 215 ILNDLSLEMETTSNRLDFVQKRVAMVMKKAGIKG 248
Score = 24.6 bits (52), Expect(2) = 3e-04
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -1
Query: 356 LMILGLLALAIFLFILVFFT 297
++IL L+ L I LF+LVF T
Sbjct: 251 MLILFLVVLFIILFVLVFLT 270
>gb|AAF16768.1|AC010155_21 F3M18.7 [Arabidopsis thaliana]
Length = 241
Score = 32.7 bits (73), Expect = 1.9
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = -2
Query: 466 IVDELGNEMDSTPNRLDFVPTQVAMVM 386
I+DEL EMDST NRL+FV V+
Sbjct: 212 IIDELDTEMDSTKNRLEFVQVNPLKVL 238
>dbj|BAB41163.1| hypothetical protein [Macaca fascicularis]
Length = 111
Score = 32.3 bits (72), Expect = 2.5
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -2
Query: 343 VCWPWLFSSLSWCSSPSHGDEASLCAVCTWKRDIIFCGDAHVLVKWKPSC 194
+C P FS+LS +P HG A LC W+R+ + H ++ P C
Sbjct: 25 LCHPVAFSALSL--APLHGGTAVLCPGACWQREAVVEVGVHGWIQALPCC 72
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 442,183,828
Number of Sequences: 1393205
Number of extensions: 9985786
Number of successful extensions: 23426
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 22848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23418
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12232797444
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
