Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002559A_C01 KMC002559A_c01
(411 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T09544 phosphoprotein phosphatase (EC 3.1.3.16), catalytic ... 54 4e-07
pir||T09547 phosphoprotein phosphatase (EC 3.1.3.16) 1, catalyti... 46 1e-04
pir||T09995 phosphoprotein phosphatase (EC 3.1.3.16) 1a catalyti... 35 0.29
ref|NP_085471.2| maturation protein [Bacteriophage AP205] gi|281... 33 1.1
gb|EAA14799.1| agCP4565 [Anopheles gambiae str. PEST] 31 3.2
>pir||T09544 phosphoprotein phosphatase (EC 3.1.3.16), catalytic beta chain -
alfalfa gi|3176072|emb|CAA05491.1| protein phosphatase
1, catalytic beta subunit [Medicago sativa]
Length = 326
Score = 54.3 bits (129), Expect = 4e-07
Identities = 25/26 (96%), Positives = 25/26 (96%)
Frame = -1
Query: 411 LNFGSTTTTKPGNSPAGVKSFLGAKV 334
LNFGSTTTTKPGNSPAGVKSFLG KV
Sbjct: 301 LNFGSTTTTKPGNSPAGVKSFLGTKV 326
>pir||T09547 phosphoprotein phosphatase (EC 3.1.3.16) 1, catalytic gsmma chain -
alfalfa gi|3176074|emb|CAA05492.1| protein phosphatase
1, catalytic gsmms subunit [Medicago sativa]
Length = 325
Score = 46.2 bits (108), Expect = 1e-04
Identities = 22/26 (84%), Positives = 22/26 (84%)
Frame = -1
Query: 411 LNFGSTTTTKPGNSPAGVKSFLGAKV 334
LNFGSTTT KP NSPAGVK LGAKV
Sbjct: 300 LNFGSTTTAKPENSPAGVKYLLGAKV 325
>pir||T09995 phosphoprotein phosphatase (EC 3.1.3.16) 1a catalytic chain -
Madagascar periwinkle gi|3255941|emb|CAA07470.1| PP1A
protein [Catharanthus roseus]
Length = 326
Score = 34.7 bits (78), Expect = 0.29
Identities = 16/21 (76%), Positives = 16/21 (76%)
Frame = -1
Query: 405 FGSTTTTKPGNSPAGVKSFLG 343
FGS TT K G SPA VKSFLG
Sbjct: 303 FGSNTTVKTGTSPAKVKSFLG 323
>ref|NP_085471.2| maturation protein [Bacteriophage AP205]
gi|28144890|gb|AAK20389.2|AF334111_3 maturation protein
[Bacteriophage AP205]
Length = 534
Score = 32.7 bits (73), Expect = 1.1
Identities = 21/57 (36%), Positives = 28/57 (48%)
Frame = -2
Query: 407 TLEVQPLLNQETLLPV*SLSLVQKYEVNFGEKVAATTGQLGHDS*RCSSCNLQDKEI 237
TL V P LL +LS V + VNFG+ +A TG DS +S DK++
Sbjct: 420 TLSVNPFTTAWELL---TLSFVVDWFVNFGDVIAGFTGGYSDDSGATASWRFDDKKV 473
>gb|EAA14799.1| agCP4565 [Anopheles gambiae str. PEST]
Length = 1198
Score = 31.2 bits (69), Expect = 3.2
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +1
Query: 208 YHHRR--ANGTQISLSCKLQLLHLQES*PS*PVVAATFSPKLTSYFCTKERLYTG 366
+HH R A GT+ISL KL+ + + E PS VV A P + C++E G
Sbjct: 940 WHHGRNGATGTRISLKSKLKNIEIGEGFPSTGVVEAYLQPTVD---CSEEEFTWG 991
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 352,427,819
Number of Sequences: 1393205
Number of extensions: 6995630
Number of successful extensions: 14983
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 14685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14978
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 7023606888
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
