Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002558A_C01 KMC002558A_c01
(528 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567862.2| WRKY family transcription factor; protein id: A... 122 3e-27
gb|AAO42113.1| putative WRKY family transcription factor [Arabid... 122 3e-27
pir||B85362 hypothetical protein AT4g30930 [imported] - Arabidop... 99 3e-20
pir||S51529 SPF1 protein - sweet potato gi|484261|dbj|BAA06278.1... 45 7e-04
pir||G86272 hypothetical protein F7A19.5 [imported] - Arabidopsi... 45 7e-04
>ref|NP_567862.2| WRKY family transcription factor; protein id: At4g30935.1
[Arabidopsis thaliana]
Length = 460
Score = 122 bits (306), Expect = 3e-27
Identities = 67/109 (61%), Positives = 80/109 (72%), Gaps = 2/109 (1%)
Frame = -1
Query: 528 PARKHIETAVDDSNDVIITYKGVHDHDMPVPKKRHGQPNAPLVAAAAPASMSNLQLMKTD 349
P RKHIETAV+++ VIITYKGVH+HDMPVPKKRHG P++ LVAAAAP SM +TD
Sbjct: 356 PVRKHIETAVENTKAVIITYKGVHNHDMPVPKKRHGPPSSMLVAAAAPTSMRT----RTD 411
Query: 348 SPKN-QKNSQCS-GEIGGELTGEASELGGEKAIESARALLSIGFEIKPC 208
N +SQCS G + + EA ++GGEK +ESAR LLSIGFEIK C
Sbjct: 412 DQVNIPTSSQCSVGRESEKQSKEALDVGGEKVMESARTLLSIGFEIKQC 460
>gb|AAO42113.1| putative WRKY family transcription factor [Arabidopsis thaliana]
gi|28827598|gb|AAO50643.1| putative WRKY family
transcription factor [Arabidopsis thaliana]
Length = 466
Score = 122 bits (306), Expect = 3e-27
Identities = 67/109 (61%), Positives = 80/109 (72%), Gaps = 2/109 (1%)
Frame = -1
Query: 528 PARKHIETAVDDSNDVIITYKGVHDHDMPVPKKRHGQPNAPLVAAAAPASMSNLQLMKTD 349
P RKHIETAV+++ VIITYKGVH+HDMPVPKKRHG P++ LVAAAAP SM +TD
Sbjct: 362 PVRKHIETAVENTKAVIITYKGVHNHDMPVPKKRHGPPSSMLVAAAAPTSMRT----RTD 417
Query: 348 SPKN-QKNSQCS-GEIGGELTGEASELGGEKAIESARALLSIGFEIKPC 208
N +SQCS G + + EA ++GGEK +ESAR LLSIGFEIK C
Sbjct: 418 DQVNIPTSSQCSVGRESEKQSKEALDVGGEKVMESARTLLSIGFEIKQC 466
>pir||B85362 hypothetical protein AT4g30930 [imported] - Arabidopsis thaliana
gi|2980773|emb|CAA18200.1| putative protein [Arabidopsis
thaliana] gi|7269995|emb|CAB79811.1| putative protein
[Arabidopsis thaliana]
Length = 782
Score = 99.0 bits (245), Expect = 3e-20
Identities = 54/97 (55%), Positives = 68/97 (69%), Gaps = 2/97 (2%)
Frame = -1
Query: 528 PARKHIETAVDDSNDVIITYKGVHDHDMPVPKKRHGQPNAPLVAAAAPASMSNLQLMKTD 349
P RKHIETAV+++ VIITYKGVH+HDMPVPKKRHG P++ LVAAAAP SM +TD
Sbjct: 435 PVRKHIETAVENTKAVIITYKGVHNHDMPVPKKRHGPPSSMLVAAAAPTSMRT----RTD 490
Query: 348 SPKN-QKNSQCS-GEIGGELTGEASELGGEKAIESAR 244
N +SQCS G + + EA ++GGEK + + R
Sbjct: 491 DQVNIPTSSQCSVGRESEKQSKEALDVGGEKCVRALR 527
>pir||S51529 SPF1 protein - sweet potato gi|484261|dbj|BAA06278.1| SPF1 protein
[Ipomoea batatas]
Length = 549
Score = 44.7 bits (104), Expect = 7e-04
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 9/87 (10%)
Frame = -1
Query: 528 PARKHIETAVDDSNDVIITYKGVHDHDMPVPK-------KRHGQP--NAPLVAAAAPASM 376
P RKH+E A D VI TY+G H+HD+P + R P NA + A P++M
Sbjct: 417 PVRKHVERASHDIRSVITTYEGKHNHDVPAARGSGSHGLNRGANPNNNAAMAMAIRPSTM 476
Query: 375 SNLQLMKTDSPKNQKNSQCSGEIGGEL 295
S P + Q G+ E+
Sbjct: 477 SLQSNYPIPIPSTRPMQQGEGQAPYEM 503
Score = 33.5 bits (75), Expect = 1.6
Identities = 22/85 (25%), Positives = 38/85 (43%)
Frame = -1
Query: 528 PARKHIETAVDDSNDVIITYKGVHDHDMPVPKKRHGQPNAPLVAAAAPASMSNLQLMKTD 349
P +K +E A+D I+ YKG H+H P +R A ++A+ + + +D
Sbjct: 241 PTKKKVERALDGQITEIV-YKGAHNHPKPQSTRRSSSSTA---SSASTLAAQSYNAPASD 296
Query: 348 SPKNQKNSQCSGEIGGELTGEASEL 274
P S +G++ T E S +
Sbjct: 297 VPDQSYWSNGNGQMDSVATPENSSI 321
>pir||G86272 hypothetical protein F7A19.5 [imported] - Arabidopsis thaliana
gi|5080772|gb|AAD39282.1|AC007576_5 Similar to
DNA-binding proteins [Arabidopsis thaliana]
gi|13506741|gb|AAK28313.1|AF224703_1 WRKY DNA-binding
protein 4 [Arabidopsis thaliana]
Length = 487
Score = 44.7 bits (104), Expect = 7e-04
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -1
Query: 522 RKHIETAVDDSNDVIITYKGVHDHDMPVPK-KRHGQPNAPLVAAAAPASMSNLQLMKTDS 346
RKH+E A D V+ TY+G H+HD+P K H A L P ++NL +
Sbjct: 415 RKHVERAATDPKAVVTTYEGKHNHDLPAAKSSSHAAAAAQLRPDNRPGGLANLNQQQQQQ 474
Query: 345 P 343
P
Sbjct: 475 P 475
Score = 31.6 bits (70), Expect = 6.0
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 8/92 (8%)
Frame = -1
Query: 528 PARKHIETAVDDSNDVIITYKGVHDHDMPVPKKRHGQPNAPLV--------AAAAPASMS 373
P +K +E ++D II YKG H+H+ P KR + N + ++ S
Sbjct: 233 PVKKKVERSLDGQVTEII-YKGQHNHEPPQNTKRGNKDNTANINGSSINNNRGSSELGAS 291
Query: 372 NLQLMKTDSPKNQKNSQCSGEIGGELTGEASE 277
Q ++ K +++ S E EAS+
Sbjct: 292 QFQTNSSNKTKREQHEAVSQATTTEHLSEASD 323
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 471,038,611
Number of Sequences: 1393205
Number of extensions: 10155781
Number of successful extensions: 31992
Number of sequences better than 10.0: 133
Number of HSP's better than 10.0 without gapping: 30725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31947
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17308240320
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
