Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002557A_C01 KMC002557A_c01
(539 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK76684.1| unknown protein [Arabidopsis thaliana] 33 2.9
ref|NP_567704.1| expressed protein; protein id: At4g24500.1 [Ara... 33 2.9
ref|NP_695539.1| hypothetical protein [Bifidobacterium longum NC... 33 2.9
ref|ZP_00121887.1| hypothetical protein [Bifidobacterium longum ... 33 2.9
ref|NP_012254.1| TIP1-related; Tir3p [Saccharomyces cerevisiae] ... 33 2.9
>gb|AAK76684.1| unknown protein [Arabidopsis thaliana]
Length = 319
Score = 32.7 bits (73), Expect = 2.9
Identities = 18/48 (37%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Frame = -2
Query: 526 SAPAPENSKSWTSKSVSTKRDGSSAAPVKFSS-EPSLAEYLASALNEA 386
++ + ++W KS++ K+ +S A K SS + SLAEYLA++L+ A
Sbjct: 265 ASSSSSTGQAWLPKSIAPKKSVTSEATHKTSSNQQSLAEYLAASLDGA 312
>ref|NP_567704.1| expressed protein; protein id: At4g24500.1 [Arabidopsis thaliana]
gi|7485970|pir||T05584 hypothetical protein F22K18.300 -
Arabidopsis thaliana gi|4220540|emb|CAA23013.1|
hypothetical protein [Arabidopsis thaliana]
gi|7269300|emb|CAB79360.1| hypothetical protein
[Arabidopsis thaliana] gi|23296316|gb|AAN13039.1|
unknown protein [Arabidopsis thaliana]
Length = 319
Score = 32.7 bits (73), Expect = 2.9
Identities = 18/48 (37%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Frame = -2
Query: 526 SAPAPENSKSWTSKSVSTKRDGSSAAPVKFSS-EPSLAEYLASALNEA 386
++ + ++W KS++ K+ +S A K SS + SLAEYLA++L+ A
Sbjct: 265 ASSSSSTGQAWLPKSIAPKKSVTSEATHKTSSNQQSLAEYLAASLDGA 312
>ref|NP_695539.1| hypothetical protein [Bifidobacterium longum NCC2705]
gi|23325531|gb|AAN24175.1|AE014652_6 hypothetical
protein [Bifidobacterium longum NCC2705]
Length = 500
Score = 32.7 bits (73), Expect = 2.9
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = -2
Query: 538 PAPASAPAPENSKSWTSKSVSTKRDGSSAAPVKFSSEPSLAEYLASALNEAAESAE 371
PAPASAP+ SK+ T SAAP + ++ + + +A E A+
Sbjct: 445 PAPASAPSSATSKATAEIPAETAAGADSAAPARADTDADAGTTASPSAEDATEIAD 500
>ref|ZP_00121887.1| hypothetical protein [Bifidobacterium longum DJO10A]
Length = 548
Score = 32.7 bits (73), Expect = 2.9
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = -2
Query: 538 PAPASAPAPENSKSWTSKSVSTKRDGSSAAPVKFSSEPSLAEYLASALNEAAESAE 371
PAPASAP+ SK+ T SAAP + ++ + + +A E A+
Sbjct: 493 PAPASAPSSATSKATAEIPAETAAGADSAAPARADTDADAGTTASPSAEDATEIAD 548
>ref|NP_012254.1| TIP1-related; Tir3p [Saccharomyces cerevisiae]
gi|731779|sp|P40552|TIR3_YEAST Cell wall protein TIR3
precursor gi|626353|pir||S48444 probable temperature
shock-inducible protein YIL011w - yeast (Saccharomyces
cerevisiae) gi|558391|emb|CAA86238.1| orf, len: 269,
CAI: 0.52 similar to SRP1_YEAST P10863 SERINE-RICH
PROTEIN 1 PRECURSOR [Saccharomyces cerevisiae]
Length = 269
Score = 32.7 bits (73), Expect = 2.9
Identities = 25/54 (46%), Positives = 30/54 (55%)
Frame = -2
Query: 529 ASAPAPENSKSWTSKSVSTKRDGSSAAPVKFSSEPSLAEYLASALNEAAESAEK 368
AS+ A E +KS S S K GSSAA SS S A AS+ +A+ SAEK
Sbjct: 182 ASSSASEAAKS----SSSAKSSGSSAASSAASSASSKASSAASSSAKASSSAEK 231
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 456,295,541
Number of Sequences: 1393205
Number of extensions: 9408699
Number of successful extensions: 26529
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 24684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26305
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18462123008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
