Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002555A_C01 KMC002555A_c01
(785 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196724.1| putative protein; protein id: At5g11630.1 [Arab... 104 1e-21
ref|NP_193463.1| hypothetical protein; protein id: At4g17310.1 [... 74 2e-12
dbj|BAC42399.1| unknown protein [Arabidopsis thaliana] 62 9e-09
ref|NP_568683.1| Expressed protein; protein id: At5g47455.1, sup... 61 2e-08
gb|AAM63889.1| unknown [Arabidopsis thaliana] 61 2e-08
>ref|NP_196724.1| putative protein; protein id: At5g11630.1 [Arabidopsis thaliana]
gi|11358221|pir||T48522 hypothetical protein T22P22.20 -
Arabidopsis thaliana gi|7573377|emb|CAB87681.1| putative
protein [Arabidopsis thaliana]
Length = 93
Score = 104 bits (260), Expect = 1e-21
Identities = 53/91 (58%), Positives = 66/91 (72%)
Frame = +2
Query: 38 SRYRSFSQPAMSLIKSTITKPTTNPKPSPFLFKTRSSSSSTRSVAELGCVQSLLPLHSAV 217
SR RS S+PA S +S + KP+ PK + S +R + +LG +QSLLPL+SAV
Sbjct: 3 SRCRSLSKPAFSAFRSAMNKPSIRPKSASSFIGVPPSPGFSRPIGQLGSLQSLLPLYSAV 62
Query: 218 SSARLTSCLGIDSRTSRSLSQGMLCSANPGV 310
+SARLTSCLGIDS+ SRSL+QGMLCSANPGV
Sbjct: 63 ASARLTSCLGIDSQNSRSLAQGMLCSANPGV 93
>ref|NP_193463.1| hypothetical protein; protein id: At4g17310.1 [Arabidopsis
thaliana] gi|15292857|gb|AAK92799.1| unknown protein
[Arabidopsis thaliana]
Length = 99
Score = 73.9 bits (180), Expect = 2e-12
Identities = 42/89 (47%), Positives = 60/89 (67%), Gaps = 5/89 (5%)
Frame = +2
Query: 53 FSQPAMSLIKSTI---TKPTTNPKPSPFLFKTRSSS--SSTRSVAELGCVQSLLPLHSAV 217
F++ ++S +KST+ T T+ + F ++ + S +R +ELGCVQSLLPLHS V
Sbjct: 9 FNRASVSSLKSTLRSTTGSTSAASSAGFRLPSQPTRHFSFSRCPSELGCVQSLLPLHSTV 68
Query: 218 SSARLTSCLGIDSRTSRSLSQGMLCSANP 304
++ARLTSCL SR+SR+LSQG LC +P
Sbjct: 69 AAARLTSCLSTTSRSSRALSQGTLCCTSP 97
>dbj|BAC42399.1| unknown protein [Arabidopsis thaliana]
Length = 106
Score = 62.0 bits (149), Expect = 9e-09
Identities = 34/65 (52%), Positives = 43/65 (65%)
Frame = +2
Query: 92 TKPTTNPKPSPFLFKTRSSSSSTRSVAELGCVQSLLPLHSAVSSARLTSCLGIDSRTSRS 271
+KP +P P S +R +ELGCVQSLLPLHS V++ARLTSCL SR+SR+
Sbjct: 45 SKPAASPLPR---------FSFSRCPSELGCVQSLLPLHSTVAAARLTSCLSTTSRSSRA 95
Query: 272 LSQGM 286
L+Q M
Sbjct: 96 LTQEM 100
>ref|NP_568683.1| Expressed protein; protein id: At5g47455.1, supported by cDNA:
28462. [Arabidopsis thaliana]
Length = 104
Score = 60.8 bits (146), Expect = 2e-08
Identities = 33/63 (52%), Positives = 42/63 (66%)
Frame = +2
Query: 92 TKPTTNPKPSPFLFKTRSSSSSTRSVAELGCVQSLLPLHSAVSSARLTSCLGIDSRTSRS 271
+KP +P P S +R +ELGCVQSLLPLHS V++ARLTSCL SR+SR+
Sbjct: 45 SKPAASPLPR---------FSFSRCPSELGCVQSLLPLHSTVAAARLTSCLSTTSRSSRA 95
Query: 272 LSQ 280
L+Q
Sbjct: 96 LTQ 98
>gb|AAM63889.1| unknown [Arabidopsis thaliana]
Length = 104
Score = 60.8 bits (146), Expect = 2e-08
Identities = 33/63 (52%), Positives = 42/63 (66%)
Frame = +2
Query: 92 TKPTTNPKPSPFLFKTRSSSSSTRSVAELGCVQSLLPLHSAVSSARLTSCLGIDSRTSRS 271
+KP +P P S +R +ELGCVQSLLPLHS V++ARLTSCL SR+SR+
Sbjct: 45 SKPAASPLPR---------FSFSRCPSELGCVQSLLPLHSTVAAARLTSCLSTTSRSSRA 95
Query: 272 LSQ 280
L+Q
Sbjct: 96 LTQ 98
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 686,545,943
Number of Sequences: 1393205
Number of extensions: 15632361
Number of successful extensions: 75560
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 54764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71415
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 39215601880
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
