Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002554A_C01 KMC002554A_c01
(505 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197703.1| photosystem II stability/assembly factor HCF136... 114 6e-25
gb|ZP_00110640.1| hypothetical protein [Nostoc punctiforme] 73 2e-12
ref|NP_440411.1| hypothetical protein [Synechocystis sp. PCC 680... 72 4e-12
ref|NP_043177.1| unknown [Cyanophora paradoxa] gi|1351794|sp|P48... 71 6e-12
gb|AAL78083.1| HCF136-like protein [Synechococcus sp. PCC 7002] 67 9e-11
>ref|NP_197703.1| photosystem II stability/assembly factor HCF136; protein id:
At5g23120.1, supported by cDNA: gi_15010779 [Arabidopsis
thaliana] gi|6016183|sp|O82660|H136_ARATH Photosystem II
stability/assembly factor HCF136, chloroplast precursor
gi|11358656|pir||T51828 probable photosystem II
stability protein HCF136 [imported] - Arabidopsis
thaliana gi|3559807|emb|CAA75723.1| HCF136 protein
[Arabidopsis thaliana] gi|9759370|dbj|BAB09829.1|
photosystem II stability/assembly factor HCF136
[Arabidopsis thaliana] gi|15010780|gb|AAK74049.1|
AT5g23120/MYJ24_11 [Arabidopsis thaliana]
gi|28416529|gb|AAO42795.1| At5g23120/MYJ24_11
[Arabidopsis thaliana]
Length = 403
Score = 114 bits (285), Expect = 6e-25
Identities = 52/60 (86%), Positives = 58/60 (96%)
Frame = -1
Query: 505 DEAWAAGGSGVLLRTNNGGKSWVRDQAADNIAANLYSVKFIDDKKGFVLGNDGVLLRYLG 326
+EAWAAGGSG+LLRT NGGKSW RD+AADNIAANLY+VKF+DDKKGFVLGNDGVLLRY+G
Sbjct: 344 EEAWAAGGSGILLRTRNGGKSWNRDKAADNIAANLYAVKFVDDKKGFVLGNDGVLLRYVG 403
Score = 33.1 bits (74), Expect = 1.8
Identities = 13/54 (24%), Positives = 28/54 (51%)
Frame = -1
Query: 502 EAWAAGGSGVLLRTNNGGKSWVRDQAADNIAANLYSVKFIDDKKGFVLGNDGVL 341
E W G +LL T + G++W R + + ++ +K +DK ++ ++G +
Sbjct: 156 EGWIIGKPAILLYTADAGENWDRIPLSSQLPGDMVFIKATEDKSAEMVTDEGAI 209
>gb|ZP_00110640.1| hypothetical protein [Nostoc punctiforme]
Length = 339
Score = 73.2 bits (178), Expect = 2e-12
Identities = 29/59 (49%), Positives = 46/59 (77%)
Frame = -1
Query: 505 DEAWAAGGSGVLLRTNNGGKSWVRDQAADNIAANLYSVKFIDDKKGFVLGNDGVLLRYL 329
+E W GGSG LLR+ +GGK+W +D+ + +AANLY + F++ ++GF++G+ GVLL+YL
Sbjct: 270 EEIWVGGGSGNLLRSADGGKTWEKDRDIEEVAANLYKIVFLEPERGFIIGDRGVLLKYL 328
Score = 35.4 bits (80), Expect = 0.37
Identities = 17/56 (30%), Positives = 28/56 (49%)
Frame = -1
Query: 502 EAWAAGGSGVLLRTNNGGKSWVRDQAADNIAANLYSVKFIDDKKGFVLGNDGVLLR 335
E W AG G+LL T + G SW R ++ + + +VK + D + N G + +
Sbjct: 100 EGWIAGEPGLLLHTTDEGASWSRIPLSEKLPGSPIAVKALADNTAEMATNVGAIYK 155
Score = 30.8 bits (68), Expect = 9.1
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -1
Query: 505 DEAWAAGGSGVLLRTNNGGKSWVR-DQAADNIAANLYSVKFIDDKKGFVLGNDGVLL 338
+ + G + LL TN+GG SW D SV F K+G++ G G+LL
Sbjct: 56 EHGYLVGSNATLLETNDGGNSWKPITLQLDEQKYRFDSVSFA-GKEGWIAGEPGLLL 111
>ref|NP_440411.1| hypothetical protein [Synechocystis sp. PCC 6803]
gi|6136531|sp|P73069|Y48L_SYNY3 Ycf48-like protein
gi|7470574|pir||S75177 hypothetical protein slr2034 -
Synechocystis sp. (strain PCC 6803)
gi|1652167|dbj|BAA17091.1| ORF_ID:slr2034~hypothetical
protein [Synechocystis sp. PCC 6803]
Length = 342
Score = 72.0 bits (175), Expect = 4e-12
Identities = 30/58 (51%), Positives = 42/58 (71%)
Frame = -1
Query: 505 DEAWAAGGSGVLLRTNNGGKSWVRDQAADNIAANLYSVKFIDDKKGFVLGNDGVLLRY 332
+E W AG SG LL + +GG++W +D ++I ANLY V F+ +KGFVLG DG+LL+Y
Sbjct: 275 EEVWVAGASGNLLMSQDGGQTWAKDTGVEDIPANLYRVVFLSPEKGFVLGQDGILLKY 332
Score = 33.1 bits (74), Expect = 1.8
Identities = 12/38 (31%), Positives = 21/38 (54%)
Frame = -1
Query: 505 DEAWAAGGSGVLLRTNNGGKSWVRDQAADNIAANLYSV 392
+E W G +LL T +GG++W R ++ + YS+
Sbjct: 104 NEGWITGKPSILLHTTDGGQTWARIPLSEKLPGAPYSI 141
>ref|NP_043177.1| unknown [Cyanophora paradoxa] gi|1351794|sp|P48325|YC48_CYAPA
Hypothetical 37.3 kDa protein ycf48 (ORF333)
gi|7484243|pir||T06865 hypothetical protein 333 -
Cyanophora paradoxa cyanelle gi|1016121|gb|AAA81208.1|
putative protein of 333 amino acids
Length = 333
Score = 71.2 bits (173), Expect = 6e-12
Identities = 29/58 (50%), Positives = 41/58 (70%)
Frame = -1
Query: 502 EAWAAGGSGVLLRTNNGGKSWVRDQAADNIAANLYSVKFIDDKKGFVLGNDGVLLRYL 329
E W +GGSG+LL + + G +W ++ + DNI +N Y + FID + GFVLGN G LLRY+
Sbjct: 274 EIWVSGGSGILLSSQDTGNTWKKETSTDNIPSNFYKISFIDKEVGFVLGNQGTLLRYV 331
>gb|AAL78083.1| HCF136-like protein [Synechococcus sp. PCC 7002]
Length = 340
Score = 67.4 bits (163), Expect = 9e-11
Identities = 28/57 (49%), Positives = 39/57 (68%)
Frame = -1
Query: 502 EAWAAGGSGVLLRTNNGGKSWVRDQAADNIAANLYSVKFIDDKKGFVLGNDGVLLRY 332
E WA GGSG ++ + +GG +W RD A + I N Y V F+++ KGF+LG GV+LRY
Sbjct: 277 ELWAVGGSGSVVVSKDGGDTWFRDAALEEIPTNFYRVVFLNENKGFILGQQGVILRY 333
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 417,175,115
Number of Sequences: 1393205
Number of extensions: 8341108
Number of successful extensions: 19921
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 19476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19911
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15362785481
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
