Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002553A_C01 KMC002553A_c01
(513 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB08772.1| gene_id:MBG8.20~pir||T05472~similar to unknown p... 69 2e-11
ref|NP_568817.1| putative protein; protein id: At5g54930.1, supp... 69 2e-11
ref|NP_193921.1| putative protein; protein id: At4g21900.1 [Arab... 50 2e-05
ref|NP_200101.1| putative protein; protein id: At5g52890.1 [Arab... 43 0.002
gb|EAA20014.1| AT hook motif, putative [Plasmodium yoelii yoelii] 35 0.67
>dbj|BAB08772.1| gene_id:MBG8.20~pir||T05472~similar to unknown protein [Arabidopsis
thaliana]
Length = 294
Score = 69.3 bits (168), Expect = 2e-11
Identities = 45/111 (40%), Positives = 65/111 (58%), Gaps = 1/111 (0%)
Frame = +2
Query: 179 MEQENHN-NNPDGSGDVPLKRKRGRPRKYPRADLEEGPHILPGQSSVQNPVRDEHTPVPP 355
ME+E+H NN SGD+ KRKRGRPRK + LE H L H+P
Sbjct: 1 MEKESHEENNHTISGDLTAKRKRGRPRK--QLKLESNEHSLG------------HSP--- 43
Query: 356 GFVGVNGNQHLQRGQENDSRDALVSQVVSGVIEAVFDAGYLLSVRVGDSDT 508
+ ++ Q+ ++ + +A+V Q +SGVIEA F+AG+LLSV+VG+SD+
Sbjct: 44 -----SFSRSQQQSRQRNDDEAMVGQPISGVIEATFEAGFLLSVKVGNSDS 89
>ref|NP_568817.1| putative protein; protein id: At5g54930.1, supported by cDNA:
30073. [Arabidopsis thaliana] gi|22022577|gb|AAM83245.1|
AT5g54930/MBG8_20 [Arabidopsis thaliana]
gi|28416449|gb|AAO42755.1| At5g54930/MBG8_20
[Arabidopsis thaliana]
Length = 286
Score = 69.3 bits (168), Expect = 2e-11
Identities = 45/111 (40%), Positives = 65/111 (58%), Gaps = 1/111 (0%)
Frame = +2
Query: 179 MEQENHN-NNPDGSGDVPLKRKRGRPRKYPRADLEEGPHILPGQSSVQNPVRDEHTPVPP 355
ME+E+H NN SGD+ KRKRGRPRK + LE H L H+P
Sbjct: 1 MEKESHEENNHTISGDLTAKRKRGRPRK--QLKLESNEHSLG------------HSP--- 43
Query: 356 GFVGVNGNQHLQRGQENDSRDALVSQVVSGVIEAVFDAGYLLSVRVGDSDT 508
+ ++ Q+ ++ + +A+V Q +SGVIEA F+AG+LLSV+VG+SD+
Sbjct: 44 -----SFSRSQQQSRQRNDDEAMVGQPISGVIEATFEAGFLLSVKVGNSDS 89
>ref|NP_193921.1| putative protein; protein id: At4g21900.1 [Arabidopsis thaliana]
gi|7487825|pir||T05472 hypothetical protein T8O5.110 -
Arabidopsis thaliana gi|2894568|emb|CAA17157.1| putative
protein [Arabidopsis thaliana] gi|7269035|emb|CAB79145.1|
putative protein [Arabidopsis thaliana]
Length = 1094
Score = 50.1 bits (118), Expect = 2e-05
Identities = 40/117 (34%), Positives = 49/117 (41%)
Frame = +2
Query: 158 WSNRNTKMEQENHNNNPDGSGDVPLKRKRGRPRKYPRADLEEGPHILPGQSSVQNPVRDE 337
W N + Q+ N+ P S D KRKRGRPRK DE
Sbjct: 845 WKRLN-QQNQDIMNSPPPSSNDGLAKRKRGRPRK------------------------DE 879
Query: 338 HTPVPPGFVGVNGNQHLQRGQENDSRDALVSQVVSGVIEAVFDAGYLLSVRVGDSDT 508
++ P LV +VV+GVIE FDAGYLL+V+V DSDT
Sbjct: 880 NSTPKPDM-------------------NLVGKVVTGVIEGSFDAGYLLNVKVKDSDT 917
>ref|NP_200101.1| putative protein; protein id: At5g52890.1 [Arabidopsis thaliana]
gi|10177103|dbj|BAB10437.1|
gene_id:MXC20.12~pir||T05472~similar to unknown protein
[Arabidopsis thaliana]
Length = 385
Score = 43.1 bits (100), Expect = 0.002
Identities = 36/110 (32%), Positives = 49/110 (43%)
Frame = +2
Query: 176 KMEQENHNNNPDGSGDVPLKRKRGRPRKYPRADLEEGPHILPGQSSVQNPVRDEHTPVPP 355
KME + N S + KRKRGRPR+ +S Q PV PP
Sbjct: 6 KMEMDQLNQG--SSSSLTNKRKRGRPRR--------------DESQTQQPVN------PP 43
Query: 356 GFVGVNGNQHLQRGQENDSRDALVSQVVSGVIEAVFDAGYLLSVRVGDSD 505
V+ N L+ +VVSGV+E F+AGY L+V+V D++
Sbjct: 44 ----VDEN--------------LIGRVVSGVVEGSFEAGYFLNVKVADTE 75
>gb|EAA20014.1| AT hook motif, putative [Plasmodium yoelii yoelii]
Length = 514
Score = 34.7 bits (78), Expect = 0.67
Identities = 12/23 (52%), Positives = 19/23 (82%)
Frame = +2
Query: 188 ENHNNNPDGSGDVPLKRKRGRPR 256
EN+NN +G G++ +KR+RGRP+
Sbjct: 295 ENNNNEQNGQGEIKVKRRRGRPK 317
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 503,773,056
Number of Sequences: 1393205
Number of extensions: 12770074
Number of successful extensions: 47738
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 39829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47052
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 16232377112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
