Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002552A_C01 KMC002552A_c01
(523 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC16488.1| putative transcription factor APFI [Oryza sativa... 79 4e-14
gb|AAK28403.1|AF249876_1 transcription factor APFI [Arabidopsis ... 69 3e-11
ref|NP_175159.1| Unknown protein; protein id: At1g47260.1, suppo... 69 3e-11
gb|AAM61583.1| unknown [Arabidopsis thaliana] 69 3e-11
ref|NP_564091.1| expressed protein; protein id: At1g19580.1, sup... 69 3e-11
>dbj|BAC16488.1| putative transcription factor APFI [Oryza sativa (japonica
cultivar-group)] gi|23495721|dbj|BAC19933.1| putative
transcription factor APFI [Oryza sativa (japonica
cultivar-group)]
Length = 273
Score = 78.6 bits (192), Expect = 4e-14
Identities = 35/48 (72%), Positives = 44/48 (90%)
Frame = -2
Query: 522 EIEFEKVLRKKFARRDEDYDSMIGVVREIPPALILPDNVLPDKADQAI 379
EIE EK+LRKKFA +DE+YDSM+GVVREIPP LILPD++LP+KA +A+
Sbjct: 224 EIELEKMLRKKFAHKDEEYDSMLGVVREIPPELILPDSILPNKAQKAV 271
>gb|AAK28403.1|AF249876_1 transcription factor APFI [Arabidopsis thaliana]
Length = 278
Score = 69.3 bits (168), Expect = 3e-11
Identities = 30/41 (73%), Positives = 36/41 (87%)
Frame = -2
Query: 522 EIEFEKVLRKKFARRDEDYDSMIGVVREIPPALILPDNVLP 400
+IE E+ LRKK+AR+DEDYDSM+G+ RE PP LILPDNVLP
Sbjct: 224 QIEVERALRKKYARKDEDYDSMLGITRETPPELILPDNVLP 264
>ref|NP_175159.1| Unknown protein; protein id: At1g47260.1, supported by cDNA:
gi_13507024, supported by cDNA: gi_15028352, supported
by cDNA: gi_21280964 [Arabidopsis thaliana]
gi|25405192|pir||D96513 unknown protein, 6976-8939
[imported] - Arabidopsis thaliana
gi|12325399|gb|AAG52641.1|AC079677_5 unknown protein;
6976-8939 [Arabidopsis thaliana]
gi|15028353|gb|AAK76653.1| unknown protein [Arabidopsis
thaliana] gi|21280965|gb|AAM44984.1| unknown protein
[Arabidopsis thaliana]
Length = 278
Score = 69.3 bits (168), Expect = 3e-11
Identities = 30/41 (73%), Positives = 36/41 (87%)
Frame = -2
Query: 522 EIEFEKVLRKKFARRDEDYDSMIGVVREIPPALILPDNVLP 400
+IE E+ LRKK+AR+DEDYDSM+G+ RE PP LILPDNVLP
Sbjct: 224 QIEVERALRKKYARKDEDYDSMLGITRETPPELILPDNVLP 264
>gb|AAM61583.1| unknown [Arabidopsis thaliana]
Length = 275
Score = 68.9 bits (167), Expect = 3e-11
Identities = 31/42 (73%), Positives = 37/42 (87%)
Frame = -2
Query: 519 IEFEKVLRKKFARRDEDYDSMIGVVREIPPALILPDNVLPDK 394
IEFEKVLRKK A +DE+YDSM+G+VRE PP L LP+N+LPDK
Sbjct: 225 IEFEKVLRKKHALKDEEYDSMLGIVRETPPELNLPNNILPDK 266
>ref|NP_564091.1| expressed protein; protein id: At1g19580.1, supported by cDNA:
12477. [Arabidopsis thaliana] gi|25518562|pir||E86328
hypothetical protein F14P1.8 - Arabidopsis thaliana
gi|9795586|gb|AAF98404.1|AC024609_5 Unknown protein
[Arabidopsis thaliana]
Length = 275
Score = 68.9 bits (167), Expect = 3e-11
Identities = 31/42 (73%), Positives = 37/42 (87%)
Frame = -2
Query: 519 IEFEKVLRKKFARRDEDYDSMIGVVREIPPALILPDNVLPDK 394
IEFEKVLRKK A +DE+YDSM+G+VRE PP L LP+N+LPDK
Sbjct: 225 IEFEKVLRKKHALKDEEYDSMLGIVRETPPELNLPNNILPDK 266
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 444,004,706
Number of Sequences: 1393205
Number of extensions: 9504871
Number of successful extensions: 19495
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 19127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19495
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
