Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002551A_C01 KMC002551A_c01
(560 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK91411.1| AT4g36780/C7A10_580 [Arabidopsis thaliana] gi|204... 70 2e-11
ref|NP_565099.1| expressed protein; protein id: At1g75080.1, sup... 70 2e-11
gb|AAL57684.1| At1g75080/F9E10_7 [Arabidopsis thaliana] gi|20147... 70 2e-11
pir||G96780 unknown protein F9E10.7 [imported] - Arabidopsis tha... 70 2e-11
gb|AAF22161.1|AF134217_1 107 protein [Arabidopsis thaliana] 67 1e-10
>gb|AAK91411.1| AT4g36780/C7A10_580 [Arabidopsis thaliana]
gi|20453269|gb|AAM19873.1| AT4g36780/C7A10_580
[Arabidopsis thaliana]
Length = 318
Score = 70.1 bits (170), Expect = 2e-11
Identities = 31/45 (68%), Positives = 36/45 (79%)
Frame = -2
Query: 529 WGSGAEIGRGSDFDFENGRVKPWEGERIHEVGMEELELTLGCGKA 395
WG GRG++F+FENG VKPWEGE IHEVG+E+LELTLG KA
Sbjct: 272 WGMSGMNGRGAEFEFENGTVKPWEGEMIHEVGVEDLELTLGGTKA 316
>ref|NP_565099.1| expressed protein; protein id: At1g75080.1, supported by cDNA:
33367., supported by cDNA: gi_18086460, supported by
cDNA: gi_20147314 [Arabidopsis thaliana]
gi|20270971|gb|AAM18490.1|AF494338_1 BZR1 protein
[Arabidopsis thaliana] gi|21592862|gb|AAM64812.1|
unknown [Arabidopsis thaliana]
Length = 336
Score = 69.7 bits (169), Expect = 2e-11
Identities = 31/40 (77%), Positives = 36/40 (89%)
Frame = -2
Query: 514 EIGRGSDFDFENGRVKPWEGERIHEVGMEELELTLGCGKA 395
EIG+ S+F FEN +VKPWEGERIH+VGME+LELTLG GKA
Sbjct: 295 EIGQSSEFKFENSQVKPWEGERIHDVGMEDLELTLGNGKA 334
>gb|AAL57684.1| At1g75080/F9E10_7 [Arabidopsis thaliana] gi|20147315|gb|AAM10371.1|
At1g75080/F9E10_7 [Arabidopsis thaliana]
Length = 336
Score = 69.7 bits (169), Expect = 2e-11
Identities = 31/40 (77%), Positives = 36/40 (89%)
Frame = -2
Query: 514 EIGRGSDFDFENGRVKPWEGERIHEVGMEELELTLGCGKA 395
EIG+ S+F FEN +VKPWEGERIH+VGME+LELTLG GKA
Sbjct: 295 EIGQSSEFKFENSQVKPWEGERIHDVGMEDLELTLGNGKA 334
>pir||G96780 unknown protein F9E10.7 [imported] - Arabidopsis thaliana
gi|12323903|gb|AAG51929.1|AC013258_23 unknown protein;
17658-16304 [Arabidopsis thaliana]
Length = 333
Score = 69.7 bits (169), Expect = 2e-11
Identities = 31/40 (77%), Positives = 36/40 (89%)
Frame = -2
Query: 514 EIGRGSDFDFENGRVKPWEGERIHEVGMEELELTLGCGKA 395
EIG+ S+F FEN +VKPWEGERIH+VGME+LELTLG GKA
Sbjct: 292 EIGQSSEFKFENSQVKPWEGERIHDVGMEDLELTLGNGKA 331
>gb|AAF22161.1|AF134217_1 107 protein [Arabidopsis thaliana]
Length = 335
Score = 67.4 bits (163), Expect = 1e-10
Identities = 30/40 (75%), Positives = 35/40 (87%)
Frame = -2
Query: 514 EIGRGSDFDFENGRVKPWEGERIHEVGMEELELTLGCGKA 395
EIG+ S+F FEN +VKPWEGERIH+V ME+LELTLG GKA
Sbjct: 294 EIGQSSEFKFENSQVKPWEGERIHDVAMEDLELTLGNGKA 333
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 462,161,453
Number of Sequences: 1393205
Number of extensions: 9491022
Number of successful extensions: 24529
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 23432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24500
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
