Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002550A_C01 KMC002550A_c01
(539 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA96585.1| unnamed protein product [Oryza sativa (japonica ... 111 1e-28
sp|P24226|HISX_BRAOC Histidinol dehydrogenase, chloroplast precu... 108 1e-27
dbj|BAB11037.1| histidinol dehydrogenase [Arabidopsis thaliana] 108 1e-27
ref|NP_680464.1| histidinol dehydrogenase; protein id: At5g63890... 108 1e-27
ref|NP_568981.1| histidinol dehydrogenase; protein id: At5g63890... 108 1e-27
>dbj|BAA96585.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 459
Score = 111 bits (278), Expect(2) = 1e-28
Identities = 52/56 (92%), Positives = 54/56 (95%)
Frame = -3
Query: 537 ESFIENAGSVFLGQWTPESVGDYASGTNHVLPTYGYARMYSGVSLDSFLKYITVQS 370
E +ENAGSVFLGQWTPESVGDYASGTNHVLPTYGYARMYSGVSL+SFLKYITVQS
Sbjct: 362 EDLVENAGSVFLGQWTPESVGDYASGTNHVLPTYGYARMYSGVSLNSFLKYITVQS 417
Score = 36.2 bits (82), Expect(2) = 1e-28
Identities = 19/32 (59%), Positives = 25/32 (77%)
Frame = -1
Query: 368 LTEEGLRRLGPICSQPMADVEGLEAHQESCYL 273
L+EEGLR LGP ++ MA+VEGLEAH+ + L
Sbjct: 418 LSEEGLRSLGPHVAK-MAEVEGLEAHRRAVTL 448
>sp|P24226|HISX_BRAOC Histidinol dehydrogenase, chloroplast precursor (HDH)
gi|99844|pir||A39358 histidinol dehydrogenase (EC
1.1.1.23) precursor, chloroplast [validated] - cabbage
gi|167142|gb|AAA32991.1| histidinol dehydrogenase
Length = 469
Score = 108 bits (269), Expect(2) = 1e-27
Identities = 50/56 (89%), Positives = 53/56 (94%)
Frame = -3
Query: 537 ESFIENAGSVFLGQWTPESVGDYASGTNHVLPTYGYARMYSGVSLDSFLKYITVQS 370
E IENAGSVF+G WTPESVGDYASGTNHVLPTYGYARMYSGVSLDSFLK++TVQS
Sbjct: 370 EGLIENAGSVFIGPWTPESVGDYASGTNHVLPTYGYARMYSGVSLDSFLKFMTVQS 425
Score = 36.6 bits (83), Expect(2) = 1e-27
Identities = 18/32 (56%), Positives = 24/32 (74%)
Frame = -1
Query: 368 LTEEGLRRLGPICSQPMADVEGLEAHQESCYL 273
LTEEGLR LGP + MA++EGL+AH+ + L
Sbjct: 426 LTEEGLRNLGPYVA-TMAEIEGLDAHKRAVTL 456
Score = 35.4 bits (80), Expect = 0.44
Identities = 20/35 (57%), Positives = 25/35 (71%)
Frame = -2
Query: 343 LGPFVANPWLMLKVLKPTKRAVTLRLQDIEARQVQ 239
LGP+VA ++ L KRAVTLRL+DIEA+Q Q
Sbjct: 434 LGPYVAT-MAEIEGLDAHKRAVTLRLKDIEAKQTQ 467
>dbj|BAB11037.1| histidinol dehydrogenase [Arabidopsis thaliana]
Length = 467
Score = 108 bits (269), Expect(2) = 1e-27
Identities = 50/56 (89%), Positives = 53/56 (94%)
Frame = -3
Query: 537 ESFIENAGSVFLGQWTPESVGDYASGTNHVLPTYGYARMYSGVSLDSFLKYITVQS 370
E IENAGSVF+G WTPESVGDYASGTNHVLPTYGYARMYSGVSLDSFLK++TVQS
Sbjct: 370 EGLIENAGSVFIGPWTPESVGDYASGTNHVLPTYGYARMYSGVSLDSFLKFMTVQS 425
Score = 36.6 bits (83), Expect(2) = 1e-27
Identities = 18/32 (56%), Positives = 24/32 (74%)
Frame = -1
Query: 368 LTEEGLRRLGPICSQPMADVEGLEAHQESCYL 273
LTEEGLR LGP + MA++EGL+AH+ + L
Sbjct: 426 LTEEGLRNLGPYVA-TMAEIEGLDAHKRAVTL 456
Score = 33.9 bits (76), Expect = 1.3
Identities = 19/34 (55%), Positives = 25/34 (72%)
Frame = -2
Query: 343 LGPFVANPWLMLKVLKPTKRAVTLRLQDIEARQV 242
LGP+VA ++ L KRAVTLRL+DIEA+Q+
Sbjct: 434 LGPYVAT-MAEIEGLDAHKRAVTLRLKDIEAKQL 466
>ref|NP_680464.1| histidinol dehydrogenase; protein id: At5g63890.2, supported by
cDNA: gi_14532513 [Arabidopsis thaliana]
gi|13516461|dbj|BAB40445.1| histidinol dehydrogenase
[Arabidopsis thaliana] gi|14532514|gb|AAK63985.1|
AT5g63890/MGI19_9 [Arabidopsis thaliana]
gi|23505959|gb|AAN28839.1| At5g63890/MGI19_9
[Arabidopsis thaliana]
Length = 466
Score = 108 bits (269), Expect(2) = 1e-27
Identities = 50/56 (89%), Positives = 53/56 (94%)
Frame = -3
Query: 537 ESFIENAGSVFLGQWTPESVGDYASGTNHVLPTYGYARMYSGVSLDSFLKYITVQS 370
E IENAGSVF+G WTPESVGDYASGTNHVLPTYGYARMYSGVSLDSFLK++TVQS
Sbjct: 369 EGLIENAGSVFIGPWTPESVGDYASGTNHVLPTYGYARMYSGVSLDSFLKFMTVQS 424
Score = 36.6 bits (83), Expect(2) = 1e-27
Identities = 18/32 (56%), Positives = 24/32 (74%)
Frame = -1
Query: 368 LTEEGLRRLGPICSQPMADVEGLEAHQESCYL 273
LTEEGLR LGP + MA++EGL+AH+ + L
Sbjct: 425 LTEEGLRNLGPYVA-TMAEIEGLDAHKRAVTL 455
Score = 33.9 bits (76), Expect = 1.3
Identities = 19/34 (55%), Positives = 25/34 (72%)
Frame = -2
Query: 343 LGPFVANPWLMLKVLKPTKRAVTLRLQDIEARQV 242
LGP+VA ++ L KRAVTLRL+DIEA+Q+
Sbjct: 433 LGPYVAT-MAEIEGLDAHKRAVTLRLKDIEAKQL 465
>ref|NP_568981.1| histidinol dehydrogenase; protein id: At5g63890.1, supported by
cDNA: 40175. [Arabidopsis thaliana]
Length = 452
Score = 108 bits (269), Expect(2) = 1e-27
Identities = 50/56 (89%), Positives = 53/56 (94%)
Frame = -3
Query: 537 ESFIENAGSVFLGQWTPESVGDYASGTNHVLPTYGYARMYSGVSLDSFLKYITVQS 370
E IENAGSVF+G WTPESVGDYASGTNHVLPTYGYARMYSGVSLDSFLK++TVQS
Sbjct: 355 EGLIENAGSVFIGPWTPESVGDYASGTNHVLPTYGYARMYSGVSLDSFLKFMTVQS 410
Score = 36.6 bits (83), Expect(2) = 1e-27
Identities = 18/32 (56%), Positives = 24/32 (74%)
Frame = -1
Query: 368 LTEEGLRRLGPICSQPMADVEGLEAHQESCYL 273
LTEEGLR LGP + MA++EGL+AH+ + L
Sbjct: 411 LTEEGLRNLGPYVA-TMAEIEGLDAHKRAVTL 441
Score = 33.9 bits (76), Expect = 1.3
Identities = 19/34 (55%), Positives = 25/34 (72%)
Frame = -2
Query: 343 LGPFVANPWLMLKVLKPTKRAVTLRLQDIEARQV 242
LGP+VA ++ L KRAVTLRL+DIEA+Q+
Sbjct: 419 LGPYVAT-MAEIEGLDAHKRAVTLRLKDIEAKQL 451
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 464,245,654
Number of Sequences: 1393205
Number of extensions: 9797600
Number of successful extensions: 26336
Number of sequences better than 10.0: 176
Number of HSP's better than 10.0 without gapping: 24949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26177
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18462123008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
