Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002549A_C01 KMC002549A_c01
(398 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196593.1| putative protein; protein id: At5g10310.1 [Arab... 64 3e-10
ref|NP_680774.1| unknown protein; protein id: At4g37810.1 [Arabi... 64 5e-10
ref|NP_180596.2| hypothetical protein; protein id: At2g30370.1 [... 58 3e-08
dbj|BAC24916.1| OJ1606_D04.4 [Oryza sativa (japonica cultivar-gr... 55 2e-07
gb|AAD02823.1| putative type 1a plasma membrane receptor [Oryza ... 53 1e-06
>ref|NP_196593.1| putative protein; protein id: At5g10310.1 [Arabidopsis thaliana]
gi|11285694|pir||T50819 hypothetical protein F18D22_80 -
Arabidopsis thaliana gi|8953412|emb|CAB96687.1| putative
protein [Arabidopsis thaliana]
Length = 122
Score = 64.3 bits (155), Expect = 3e-10
Identities = 32/76 (42%), Positives = 42/76 (55%), Gaps = 14/76 (18%)
Frame = -3
Query: 354 RIGSSPPSCEHKCYGCTPCEAIQVPS-TSRSSSRRRHSHLG-------------IQYANY 217
R+GS+PPSC ++C C PC AIQVP+ +RS R + G QY+NY
Sbjct: 47 RLGSTPPSCHNRCNNCHPCMAIQVPTLPTRSRFTRVNPFSGGFVRPPSSLTTVLDQYSNY 106
Query: 216 EPESWKCKCGPSFYSP 169
+P WKC C FY+P
Sbjct: 107 KPMGWKCHCNGHFYNP 122
>ref|NP_680774.1| unknown protein; protein id: At4g37810.1 [Arabidopsis thaliana]
gi|7487503|pir||T06028 hypothetical protein T28I19.90 -
Arabidopsis thaliana gi|4490726|emb|CAB38929.1|
hypothetical protein [Arabidopsis thaliana]
gi|7270764|emb|CAB80446.1| hypothetical protein
[Arabidopsis thaliana]
Length = 128
Score = 63.9 bits (154), Expect = 5e-10
Identities = 36/76 (47%), Positives = 41/76 (53%), Gaps = 15/76 (19%)
Frame = -3
Query: 351 IGSSPPSCEH-KCYGCTPCEAIQVPS----------TSRSSSRRRHSHL----GIQYANY 217
IGS PP CE +C C CEAIQVP+ T+ SSS HL G NY
Sbjct: 53 IGSRPPRCERVRCRSCGHCEAIQVPTNPQTKLHSPLTTSSSSSSETIHLDYTRGDDSTNY 112
Query: 216 EPESWKCKCGPSFYSP 169
+P SWKCKCG S Y+P
Sbjct: 113 KPMSWKCKCGNSIYNP 128
>ref|NP_180596.2| hypothetical protein; protein id: At2g30370.1 [Arabidopsis
thaliana]
Length = 230
Score = 57.8 bits (138), Expect = 3e-08
Identities = 26/63 (41%), Positives = 32/63 (50%)
Frame = -3
Query: 357 RRIGSSPPSCEHKCYGCTPCEAIQVPSTSRSSSRRRHSHLGIQYANYEPESWKCKCGPSF 178
R +GSSPP C KC CTPC+ + VP + A Y PE+W+CKCG
Sbjct: 178 RGLGSSPPRCSSKCGRCTPCKPVHVPVPPGTPVT----------AEYYPEAWRCKCGNKL 227
Query: 177 YSP 169
Y P
Sbjct: 228 YMP 230
>dbj|BAC24916.1| OJ1606_D04.4 [Oryza sativa (japonica cultivar-group)]
Length = 129
Score = 55.5 bits (132), Expect = 2e-07
Identities = 31/99 (31%), Positives = 43/99 (43%), Gaps = 26/99 (26%)
Frame = -3
Query: 387 ERMKEEAYYDRRIGSSPPSCEHKCYGCTPCEAIQVP-----------STSRSSSRRRHSH 241
E+M+ E R IGS PP CE C C CEA+QVP + +++ + H
Sbjct: 31 EKMEMEMEGRRLIGSRPPRCERVCMSCGHCEAVQVPIVPQVIQKTQTKAAAAAAAEQEQH 90
Query: 240 LGIQ---------------YANYEPESWKCKCGPSFYSP 169
+ + +NY+P SWKCKCG P
Sbjct: 91 VVVSATAISAAVFTYRVNGLSNYKPLSWKCKCGGIILDP 129
>gb|AAD02823.1| putative type 1a plasma membrane receptor [Oryza sativa]
Length = 196
Score = 52.8 bits (125), Expect = 1e-06
Identities = 21/31 (67%), Positives = 25/31 (79%)
Frame = -3
Query: 354 RIGSSPPSCEHKCYGCTPCEAIQVPSTSRSS 262
R+GSSPPSC KCYGC+PC A+QVP+ S S
Sbjct: 63 RLGSSPPSCYSKCYGCSPCVAVQVPTLSAPS 93
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 342,231,676
Number of Sequences: 1393205
Number of extensions: 7171233
Number of successful extensions: 20167
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 19504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20101
length of database: 448,689,247
effective HSP length: 108
effective length of database: 298,223,107
effective search space used: 7157354568
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
