Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002547A_C01 KMC002547A_c01
(400 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_653265.1| hypothetical protein MGC33371 [Homo sapiens] gi... 34 0.38
ref|XP_221350.1| hypothetical protein XP_221350 [Rattus norvegicus] 31 3.3
ref|NP_789806.1| RIKEN cDNA 2810485I05; expressed sequence C7830... 31 3.3
ref|XP_155955.3| hypothetical protein XP_155955 [Mus musculus] g... 31 3.3
gb|AAH36194.1| Unknown (protein for IMAGE:5267040) [Homo sapiens] 31 3.3
>ref|NP_653265.1| hypothetical protein MGC33371 [Homo sapiens]
gi|19683970|gb|AAH26013.1| Unknown (protein for
MGC:33371) [Homo sapiens]
Length = 233
Score = 34.3 bits (77), Expect = 0.38
Identities = 19/43 (44%), Positives = 21/43 (48%)
Frame = +3
Query: 234 SSSSSQSSVLSPPD*RRPCHHRHPLTSQLRRSSGDFKFQNLSP 362
S S+S SS L+ D P HH H R SS K NLSP
Sbjct: 152 SHSNSSSSSLTEKDQHHPKHHHHHHHHHHRHSSSHHKISNLSP 194
>ref|XP_221350.1| hypothetical protein XP_221350 [Rattus norvegicus]
Length = 736
Score = 31.2 bits (69), Expect = 3.3
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 10/66 (15%)
Frame = -1
Query: 274 SGGER--TLDWDDEE--------DYKFTFLSFLPSLNLNHPNKRIFQDSQIQRHMMMVHR 125
SGG R +D D +E DY F +P+L L+ N+ + D RH + H
Sbjct: 335 SGGVREGVVDLDLDELNVYARGTDYDMDFTLLVPALKLHDRNQPVTLD---MRHSALCHS 391
Query: 124 WTSLKL 107
W SL+L
Sbjct: 392 WLSLRL 397
>ref|NP_789806.1| RIKEN cDNA 2810485I05; expressed sequence C78303 [Mus musculus]
gi|27695445|gb|AAH43120.1| Similar to hypothetical
protein MGC34648 [Mus musculus]
Length = 339
Score = 31.2 bits (69), Expect = 3.3
Identities = 18/43 (41%), Positives = 21/43 (47%)
Frame = +3
Query: 234 SSSSSQSSVLSPPD*RRPCHHRHPLTSQLRRSSGDFKFQNLSP 362
S S+S SS L+ D HH H R SSG K +LSP
Sbjct: 152 SHSNSSSSSLTEKDQHHSKHHHHHHHHHHRHSSGHHKVSSLSP 194
>ref|XP_155955.3| hypothetical protein XP_155955 [Mus musculus]
gi|29244186|ref|NP_808386.1| hypothetical protein
A430031N04 [Mus musculus] gi|26348185|dbj|BAC37732.1|
unnamed protein product [Mus musculus]
Length = 428
Score = 31.2 bits (69), Expect = 3.3
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 10/66 (15%)
Frame = -1
Query: 274 SGGER--TLDWDDEE--------DYKFTFLSFLPSLNLNHPNKRIFQDSQIQRHMMMVHR 125
SGG R +D D +E DY F +P+L L+ N+ + D RH + H
Sbjct: 27 SGGVREGVVDLDLDELNVYARGTDYDMDFTLLVPALKLHDRNQPVTLD---MRHSALCHS 83
Query: 124 WTSLKL 107
W SL+L
Sbjct: 84 WLSLRL 89
>gb|AAH36194.1| Unknown (protein for IMAGE:5267040) [Homo sapiens]
Length = 592
Score = 31.2 bits (69), Expect = 3.3
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 10/66 (15%)
Frame = -1
Query: 274 SGGER--TLDWDDEE--------DYKFTFLSFLPSLNLNHPNKRIFQDSQIQRHMMMVHR 125
SGG R +D D +E DY F +P+L L+ N+ + D RH + H
Sbjct: 191 SGGVREGVVDLDLDELNVYARGTDYDMDFTLLVPALKLHDRNQPVTLD---MRHSALCHS 247
Query: 124 WTSLKL 107
W SL+L
Sbjct: 248 WLSLRL 253
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 397,039,771
Number of Sequences: 1393205
Number of extensions: 9194046
Number of successful extensions: 26762
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 25335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26682
length of database: 448,689,247
effective HSP length: 108
effective length of database: 298,223,107
effective search space used: 7157354568
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
