Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002542A_C01 KMC002542A_c01
(701 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T07179 probable alcohol dehydrogenase (EC 1.1.1.1) (clone C... 138 9e-32
dbj|BAC10189.1| contains EST C99136(E10204)~similar to alcohol d... 109 4e-23
ref|NP_173660.1| alcohol dehydrogenase ADH, putative; protein id... 103 2e-21
gb|AAM67260.1| alcohol dehydrogenase-like protein [Arabidopsis t... 103 2e-21
gb|AAN64150.1| Putative alcohol dehydrogenase [Oryza sativa (jap... 99 7e-20
>pir||T07179 probable alcohol dehydrogenase (EC 1.1.1.1) (clone CP67) - potato
gi|1039355|emb|CAA63093.1| alcohol dehydrogenase
[Solanum tuberosum]
Length = 377
Score = 138 bits (347), Expect = 9e-32
Identities = 65/146 (44%), Positives = 99/146 (67%)
Frame = -3
Query: 696 KREKGEAFGMTHSINPGDSTKSASELVKELSGGIGMDYSFECSGFAPLPTESLEATKVGT 517
K+ KGE FGMT INP +S S SE++K+++ G+G+DY FEC+G + E++EA+K+G
Sbjct: 231 KQGKGELFGMTDFINPKESMTSVSEMIKDVTEGLGVDYVFECTGIPSMLNEAIEASKLGI 290
Query: 516 GETIAIGVGTEPIVPFAILSILYGRTLKGSILGGLKAISDFSIIANKCQKEEFPLQELFT 337
G + IG G F ++ +L GRTLKGSI GG++ SD I ++C +E L EL T
Sbjct: 291 GTIVVIGAGHGLTREFNLVPLLCGRTLKGSIYGGIRLHSDLPAILHRCATKEIQLNELIT 350
Query: 336 HEVTLADISKAFELVIQSSCVKVVIK 259
H+++L +I+++FEL+ CVK++IK
Sbjct: 351 HQISLTEINQSFELLKDPHCVKIIIK 376
>dbj|BAC10189.1| contains EST C99136(E10204)~similar to alcohol dehydrogenase [Oryza
sativa (japonica cultivar-group)]
Length = 390
Score = 109 bits (272), Expect = 4e-23
Identities = 58/149 (38%), Positives = 92/149 (60%), Gaps = 2/149 (1%)
Frame = -3
Query: 696 KREKGEAFGMTHSINPGDST-KSASELVKELSGGIGMDYSFECSGFAPLPTESLEATKVG 520
K + G+ GMT INP D+ K+ SE++KE++GG G DY FEC G + E+ ++T+ G
Sbjct: 232 KFDVGKRLGMTDFINPNDTGGKTVSEVIKEMTGGGGADYCFECIGSTSVMAEAFQSTRNG 291
Query: 519 TGETIAIGV-GTEPIVPFAILSILYGRTLKGSILGGLKAISDFSIIANKCQKEEFPLQEL 343
G+TI +GV G + + IL GR++ GS+ GG+K +D ++A K +E L+E
Sbjct: 292 WGKTILLGVSGNKAPISIPSHEILRGRSVIGSLFGGIKPKNDIPMLAQKYLDKELELEEF 351
Query: 342 FTHEVTLADISKAFELVIQSSCVKVVIKM 256
THE+ +I++AFEL+ Q ++ +I M
Sbjct: 352 ITHEMGFEEINRAFELLTQGKSIRCIIWM 380
>ref|NP_173660.1| alcohol dehydrogenase ADH, putative; protein id: At1g22440.1
[Arabidopsis thaliana] gi|25283044|pir||E86357 alcohol
dehydrogenase (EC 1.-.-.-) [similarity] - Arabidopsis
thaliana gi|6587844|gb|AAF18533.1|AC006551_19 Very
similar to alcohol dehydrogenase [Arabidopsis thaliana]
Length = 386
Score = 103 bits (257), Expect = 2e-21
Identities = 54/149 (36%), Positives = 95/149 (63%), Gaps = 2/149 (1%)
Frame = -3
Query: 696 KREKGEAFGMTHSINPG-DSTKSASELVKELSGGIGMDYSFECSGFAPLPTESLEATKVG 520
K E G+ FG+T +NP K+ SE+++E++ +G DYSFEC G A L E+ ++T+ G
Sbjct: 237 KFEIGKRFGITDFVNPALCGEKTISEVIREMTD-VGADYSFECIGLASLMEEAFKSTRPG 295
Query: 519 TGETIAIGVGTEPI-VPFAILSILYGRTLKGSILGGLKAISDFSIIANKCQKEEFPLQEL 343
+G+TI +G+ + + + +L GRT+ G++ GGLK D I+ ++ K+E L++L
Sbjct: 296 SGKTIVLGMEQKALPISLGSYDLLRGRTVCGTLFGGLKPKLDIPILVDRYLKKELNLEDL 355
Query: 342 FTHEVTLADISKAFELVIQSSCVKVVIKM 256
THE++ +I+KAF L+ + + ++ +I M
Sbjct: 356 ITHELSFEEINKAFHLLAEGNSIRCIIWM 384
>gb|AAM67260.1| alcohol dehydrogenase-like protein [Arabidopsis thaliana]
Length = 384
Score = 103 bits (257), Expect = 2e-21
Identities = 58/150 (38%), Positives = 91/150 (60%), Gaps = 3/150 (2%)
Frame = -3
Query: 696 KREKGEAFGMTHSINPG-DSTKSASELVKELSGGIGMDYSFECSGFAPLPTESLEATKVG 520
K E G+ FG T INP K SE++KE++GG G+DYSFEC G L TE+ +T+ G
Sbjct: 235 KFELGKKFGFTSFINPTLCGEKKISEVIKEMTGG-GVDYSFECVGLPSLLTEAFSSTRTG 293
Query: 519 TGETIAIGVGTEPIVPFAILS--ILYGRTLKGSILGGLKAISDFSIIANKCQKEEFPLQE 346
+G+T+ +G+ + P ++ S +L GR + GS+ GGLK D I+ + K+E L
Sbjct: 294 SGKTVVLGIDKH-LTPVSLGSFDLLRGRHVCGSLFGGLKPKLDIPILVDHYLKKELNLDS 352
Query: 345 LFTHEVTLADISKAFELVIQSSCVKVVIKM 256
THE+ +I+KAF+L++Q ++ ++ M
Sbjct: 353 FITHELKFEEINKAFDLLVQGKSLRCILWM 382
>gb|AAN64150.1| Putative alcohol dehydrogenase [Oryza sativa (japonica
cultivar-group)]
Length = 360
Score = 98.6 bits (244), Expect = 7e-20
Identities = 56/151 (37%), Positives = 90/151 (59%), Gaps = 3/151 (1%)
Frame = -3
Query: 699 MKREKGEAFGMTHSINPGD-STKSASELVKELSGGIGMDYSFECSGFAPLPTESLEATKV 523
++R G+ FG+T +NP KS SE++ ++ G G DYSFEC G + + TE+
Sbjct: 216 IRRIGGKEFGVTDFVNPSQLGDKSVSEVINAMTDG-GADYSFECIGISSVMTEA------ 268
Query: 522 GTGETIAIGV--GTEPIVPFAILSILYGRTLKGSILGGLKAISDFSIIANKCQKEEFPLQ 349
G G+TI +GV ++P+ L+G+ + GS+ GG K +D I+A KC +E L+
Sbjct: 269 GRGKTIILGVEKDSQPLC-LPSFEFLFGKCVMGSLFGGAKPKTDIPILAEKCMNKELELE 327
Query: 348 ELFTHEVTLADISKAFELVIQSSCVKVVIKM 256
+L THEV L +I+ AF+L++Q ++ +I M
Sbjct: 328 KLVTHEVGLTEINTAFDLLLQGKSLRCIIWM 358
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 594,028,794
Number of Sequences: 1393205
Number of extensions: 13146301
Number of successful extensions: 29699
Number of sequences better than 10.0: 664
Number of HSP's better than 10.0 without gapping: 27922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29073
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 32250355128
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
