Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002541A_C01 KMC002541A_c01
(647 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB41197.1| hypothetical protein [Glycine max] 152 3e-36
gb|AAM13190.1| unknown protein [Arabidopsis thaliana] 117 1e-25
gb|AAG50526.1|AC084221_8 unknown protein [Arabidopsis thaliana] 117 1e-25
gb|AAK32845.1|AF361833_1 At1g26110/F28B23_21 [Arabidopsis thalia... 117 1e-25
ref|NP_564239.1| expressed protein; protein id: At1g26110.1, sup... 117 1e-25
>dbj|BAB41197.1| hypothetical protein [Glycine max]
Length = 620
Score = 152 bits (385), Expect = 3e-36
Identities = 78/104 (75%), Positives = 85/104 (81%)
Frame = -1
Query: 647 AFDEDYNEEEDNDDSSNAEVKPVYNKDDFFDSLSSNVSDNASQNGRTRYSEQIKIDTETF 468
AFDEDY ++EDNDD SN EVK +YNKDDFFDSLSSN+ NASQNGRTRYSEQIKIDTETF
Sbjct: 514 AFDEDY-QDEDNDDVSNIEVKLLYNKDDFFDSLSSNMHGNASQNGRTRYSEQIKIDTETF 572
Query: 467 GDSARYRGGGRGGRGGPFRGGRTRGGFYGRGGGFGYYGRGRGRG 336
GD R+ GG RG GP R GRTRGG+YGR G+GY G GRGRG
Sbjct: 573 GDFVRHHGGRRG--RGPGRVGRTRGGYYGRLRGYGYNGGGRGRG 614
>gb|AAM13190.1| unknown protein [Arabidopsis thaliana]
Length = 496
Score = 117 bits (293), Expect = 1e-25
Identities = 64/114 (56%), Positives = 76/114 (66%), Gaps = 12/114 (10%)
Frame = -1
Query: 641 DEDYNEEEDNDDSSNAEVKPVYNKDDFFDSLSSNVSDNASQNGRTRYSEQIKIDTETFGD 462
++D + D + E KPVYNKDDFFDSLSSN D SQN R R+SEQ K+DTETFG+
Sbjct: 378 EDDDSPTVDEAELPKIEAKPVYNKDDFFDSLSSNTIDRESQNSRPRFSEQRKLDTETFGE 437
Query: 461 SARYRGGGRGGRGGPFR---------GGRTRGGFYGR---GGGFGYYGRGRGRG 336
+R+RGG RGGRGG R GGR GG+ GR GGG+GY GRG+GRG
Sbjct: 438 FSRFRGG-RGGRGGYGRNNGYSRGGYGGRGYGGYGGRGGGGGGYGYGGRGQGRG 490
>gb|AAG50526.1|AC084221_8 unknown protein [Arabidopsis thaliana]
Length = 643
Score = 117 bits (293), Expect = 1e-25
Identities = 64/114 (56%), Positives = 76/114 (66%), Gaps = 12/114 (10%)
Frame = -1
Query: 641 DEDYNEEEDNDDSSNAEVKPVYNKDDFFDSLSSNVSDNASQNGRTRYSEQIKIDTETFGD 462
++D + D + E KPVYNKDDFFDSLSSN D SQN R R+SEQ K+DTETFG+
Sbjct: 525 EDDDSPTVDEAELPKIEAKPVYNKDDFFDSLSSNTIDRESQNSRPRFSEQRKLDTETFGE 584
Query: 461 SARYRGGGRGGRGGPFR---------GGRTRGGFYGR---GGGFGYYGRGRGRG 336
+R+RGG RGGRGG R GGR GG+ GR GGG+GY GRG+GRG
Sbjct: 585 FSRFRGG-RGGRGGYGRNNGYSRGGYGGRGYGGYGGRGGGGGGYGYGGRGQGRG 637
>gb|AAK32845.1|AF361833_1 At1g26110/F28B23_21 [Arabidopsis thaliana]
gi|18700276|gb|AAL77748.1| At1g26110/F28B23_21
[Arabidopsis thaliana]
Length = 611
Score = 117 bits (293), Expect = 1e-25
Identities = 64/114 (56%), Positives = 76/114 (66%), Gaps = 12/114 (10%)
Frame = -1
Query: 641 DEDYNEEEDNDDSSNAEVKPVYNKDDFFDSLSSNVSDNASQNGRTRYSEQIKIDTETFGD 462
++D + D + E KPVYNKDDFFDSLSSN D SQN R R+SEQ K+DTETFG+
Sbjct: 493 EDDDSPTVDEAELPKIEAKPVYNKDDFFDSLSSNTIDRESQNSRPRFSEQRKLDTETFGE 552
Query: 461 SARYRGGGRGGRGGPFR---------GGRTRGGFYGR---GGGFGYYGRGRGRG 336
+R+RGG RGGRGG R GGR GG+ GR GGG+GY GRG+GRG
Sbjct: 553 FSRFRGG-RGGRGGYGRNNGYSRGGYGGRGYGGYGGRGGGGGGYGYGGRGQGRG 605
>ref|NP_564239.1| expressed protein; protein id: At1g26110.1, supported by cDNA:
gi_13605703, supported by cDNA: gi_18700275 [Arabidopsis
thaliana] gi|25403030|pir||B86387 unknown protein
[imported] - Arabidopsis thaliana
gi|12321169|gb|AAG50671.1|AC079829_4 unknown protein
[Arabidopsis thaliana]
Length = 611
Score = 117 bits (293), Expect = 1e-25
Identities = 64/114 (56%), Positives = 76/114 (66%), Gaps = 12/114 (10%)
Frame = -1
Query: 641 DEDYNEEEDNDDSSNAEVKPVYNKDDFFDSLSSNVSDNASQNGRTRYSEQIKIDTETFGD 462
++D + D + E KPVYNKDDFFDSLSSN D SQN R R+SEQ K+DTETFG+
Sbjct: 493 EDDDSPTVDEAELPKIEAKPVYNKDDFFDSLSSNTIDRESQNSRPRFSEQRKLDTETFGE 552
Query: 461 SARYRGGGRGGRGGPFR---------GGRTRGGFYGR---GGGFGYYGRGRGRG 336
+R+RGG RGGRGG R GGR GG+ GR GGG+GY GRG+GRG
Sbjct: 553 FSRFRGG-RGGRGGYGRNNGYSRGGYGGRGYGGYGGRGGGGGGYGYGGRGQGRG 605
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 566,305,339
Number of Sequences: 1393205
Number of extensions: 14933549
Number of successful extensions: 234387
Number of sequences better than 10.0: 4210
Number of HSP's better than 10.0 without gapping: 82048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166776
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27576232529
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
