Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002540A_C01 KMC002540A_c01
(589 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S53504 extensin-like protein S3 - alfalfa gi|535586|gb|AAB4... 77 2e-13
emb|CAC14218.1| TapA protein [Acidithiobacillus ferrooxidans] 62 4e-09
gb|AAN37735.1| PspA [Streptococcus pneumoniae] 60 2e-08
gb|AAF27709.1|AF071813_1 PspA [Streptococcus pneumoniae] 58 8e-08
gb|AAF27711.1|AF071815_1 PspA [Streptococcus pneumoniae] 58 8e-08
>pir||S53504 extensin-like protein S3 - alfalfa gi|535586|gb|AAB41815.1| proline
rich protein [Medicago sativa]
Length = 228
Score = 76.6 bits (187), Expect = 2e-13
Identities = 53/101 (52%), Positives = 61/101 (59%), Gaps = 9/101 (8%)
Frame = -2
Query: 588 ATPPPALTPVP-----ATSPAPAPAKVKSKSPAPAPAPALAPVVSLSPSEAPGPSLSSLS 424
ATPPPALTP P AT+PAPAPAK+KSK AP LAPV LSPS+AP P LSSLS
Sbjct: 142 ATPPPALTPTPLSSPPATTPAPAPAKLKSK------APTLAPV--LSPSDAPAPGLSSLS 193
Query: 423 PALSPAASA**WGREVVVHAEDDWELSIRAL----AFLYLL 313
P++SP+ + AE W + L AFLYLL
Sbjct: 194 PSISPSGTD-------DSGAEKLWSHKMVGLVFGCAFLYLL 227
Score = 33.1 bits (74), Expect = 2.7
Identities = 23/68 (33%), Positives = 29/68 (41%), Gaps = 5/68 (7%)
Frame = -2
Query: 588 ATPPPAL-TPVPATSPAPAPAKVKSKSPAPAPAPALAPVVSLSPSEAPGPSLS----SLS 424
++PPPA TP P S P + +P P P P V +P A P S S
Sbjct: 71 SSPPPAQSTPPPVQSSPPPVSAPPPVQQSPPPTPLTPPPVQSTPPPASPPPASPPPFSPP 130
Query: 423 PALSPAAS 400
PA P A+
Sbjct: 131 PATPPPAT 138
Score = 33.1 bits (74), Expect = 2.7
Identities = 24/66 (36%), Positives = 29/66 (43%), Gaps = 9/66 (13%)
Frame = -2
Query: 579 PPALTP--VPATSPAP---APAKVKSKSP----APAPAPALAPVVSLSPSEAPGPSLSSL 427
PPA TP P SP P +P V+S P +P PA + P V SP P
Sbjct: 39 PPANTPPTTPQASPPPVQSSPPPVQSSPPPVQSSPPPAQSTPPPVQSSPPPVSAPPPVQQ 98
Query: 426 SPALSP 409
SP +P
Sbjct: 99 SPPPTP 104
Score = 32.0 bits (71), Expect = 5.9
Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 6/66 (9%)
Frame = -2
Query: 588 ATPPPALTPVPATSPAPAPAKVK----SKSPAPAPAPALAPVVSLSPSEAP--GPSLSSL 427
++PPP + P +P PA+ SP P AP P V SP P P + S
Sbjct: 57 SSPPPVQSSPPPVQSSPPPAQSTPPPVQSSPPPVSAP---PPVQQSPPPTPLTPPPVQST 113
Query: 426 SPALSP 409
P SP
Sbjct: 114 PPPASP 119
Score = 31.6 bits (70), Expect = 7.8
Identities = 22/64 (34%), Positives = 26/64 (40%), Gaps = 8/64 (12%)
Frame = -2
Query: 576 PALTPVPATSPAPAPAKVKSKSP-----APAPAPALAPVVSLSPSEA---PGPSLSSLSP 421
P +P P T PA P SP +P P + P V SP A P P SS P
Sbjct: 30 PNSSPAPPTPPANTPPTTPQASPPPVQSSPPPVQSSPPPVQSSPPPAQSTPPPVQSSPPP 89
Query: 420 ALSP 409
+P
Sbjct: 90 VSAP 93
>emb|CAC14218.1| TapA protein [Acidithiobacillus ferrooxidans]
Length = 875
Score = 62.4 bits (150), Expect = 4e-09
Identities = 31/60 (51%), Positives = 41/60 (67%)
Frame = -2
Query: 585 TPPPALTPVPATSPAPAPAKVKSKSPAPAPAPALAPVVSLSPSEAPGPSLSSLSPALSPA 406
TP PA P PA +PAPAPA + +PAPAPAPA AP + +P+ AP P+ + +PA +PA
Sbjct: 584 TPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPA-PAPAPAPAPA 642
Score = 62.4 bits (150), Expect = 4e-09
Identities = 31/60 (51%), Positives = 41/60 (67%)
Frame = -2
Query: 585 TPPPALTPVPATSPAPAPAKVKSKSPAPAPAPALAPVVSLSPSEAPGPSLSSLSPALSPA 406
TP PA P PA +PAPAPA + +PAPAPAPA AP + +P+ AP P+ + +PA +PA
Sbjct: 582 TPTPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPA-PAPAPAPAPA 640
Score = 60.5 bits (145), Expect = 2e-08
Identities = 28/51 (54%), Positives = 36/51 (69%)
Frame = -2
Query: 582 PPPALTPVPATSPAPAPAKVKSKSPAPAPAPALAPVVSLSPSEAPGPSLSS 430
P PA P PA +PAPAPA + +PAPAPAPA AP + +P+ APG +LS+
Sbjct: 623 PAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPGVTLSN 673
Score = 60.5 bits (145), Expect = 2e-08
Identities = 30/59 (50%), Positives = 40/59 (66%)
Frame = -2
Query: 582 PPPALTPVPATSPAPAPAKVKSKSPAPAPAPALAPVVSLSPSEAPGPSLSSLSPALSPA 406
P PA P PA +PAPAPA + +PAPAPAPA AP + +P+ AP P+ + +PA +PA
Sbjct: 609 PAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPA-PAPAPAPAPA 666
Score = 60.5 bits (145), Expect = 2e-08
Identities = 30/59 (50%), Positives = 40/59 (66%)
Frame = -2
Query: 582 PPPALTPVPATSPAPAPAKVKSKSPAPAPAPALAPVVSLSPSEAPGPSLSSLSPALSPA 406
P PA P PA +PAPAPA + +PAPAPAPA AP + +P+ AP P+ + +PA +PA
Sbjct: 597 PAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPA-PAPAPAPAPA 654
Score = 58.9 bits (141), Expect = 5e-08
Identities = 29/56 (51%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Frame = -2
Query: 582 PPPALTPVPATSPAPAPAKVKSKSPAPAPAPALAPVVSLSPSEAPGPSLS-SLSPA 418
P PA P PA +PAPAPA + +PAPAPAPA AP + +P+ AP P ++ S +PA
Sbjct: 621 PAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPGVTLSNAPA 676
Score = 58.5 bits (140), Expect = 6e-08
Identities = 29/61 (47%), Positives = 38/61 (61%)
Frame = -2
Query: 582 PPPALTPVPATSPAPAPAKVKSKSPAPAPAPALAPVVSLSPSEAPGPSLSSLSPALSPAA 403
P PA P PA +PAPAPA + +PAPAPAPA AP + +P+ AP P +PA +P
Sbjct: 615 PAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAP-----APAPAPGV 669
Query: 402 S 400
+
Sbjct: 670 T 670
Score = 53.1 bits (126), Expect = 2e-06
Identities = 28/61 (45%), Positives = 39/61 (63%)
Frame = -2
Query: 588 ATPPPALTPVPATSPAPAPAKVKSKSPAPAPAPALAPVVSLSPSEAPGPSLSSLSPALSP 409
AT A+ P +PAPAPA + +PAPAPAPA AP + +P+ AP P+ + +PA +P
Sbjct: 573 ATLKMAVAGTPTPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPA-PAPAPAPAP 631
Query: 408 A 406
A
Sbjct: 632 A 632
Score = 50.8 bits (120), Expect = 1e-05
Identities = 25/62 (40%), Positives = 38/62 (60%)
Frame = -2
Query: 582 PPPALTPVPATSPAPAPAKVKSKSPAPAPAPALAPVVSLSPSEAPGPSLSSLSPALSPAA 403
P PA P PA +PAPAPA + +PAPAPAPA +S +P+ G ++++ + A++
Sbjct: 635 PAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPGVTLSNAPAFHSGRAVAASTYAVNVGG 694
Query: 402 SA 397
A
Sbjct: 695 DA 696
Score = 37.0 bits (84), Expect = 0.18
Identities = 21/50 (42%), Positives = 30/50 (60%)
Frame = -2
Query: 555 ATSPAPAPAKVKSKSPAPAPAPALAPVVSLSPSEAPGPSLSSLSPALSPA 406
AT A + +PAPAPAPA AP + +P+ AP P+ + +PA +PA
Sbjct: 570 ATDATLKMAVAGTPTPAPAPAPAPAPAPAPAPAPAPAPA-PAPAPAPAPA 618
>gb|AAN37735.1| PspA [Streptococcus pneumoniae]
Length = 224
Score = 60.5 bits (145), Expect = 2e-08
Identities = 32/61 (52%), Positives = 36/61 (58%), Gaps = 2/61 (3%)
Frame = -2
Query: 582 PPPALTPVPATSPAPAPAKVKSKSPAPAPA--PALAPVVSLSPSEAPGPSLSSLSPALSP 409
P PAL PVPA PAPAPA + PAPAPA PA AP + P+ AP P+ PA P
Sbjct: 146 PAPALKPVPAPKPAPAPAPAPAPKPAPAPAPKPAPAPAPAPKPAPAPAPAPKPEKPAEKP 205
Query: 408 A 406
A
Sbjct: 206 A 206
Score = 55.5 bits (132), Expect = 5e-07
Identities = 28/59 (47%), Positives = 33/59 (55%)
Frame = -2
Query: 582 PPPALTPVPATSPAPAPAKVKSKSPAPAPAPALAPVVSLSPSEAPGPSLSSLSPALSPA 406
P PAL P PA P PAP + +PAPAP PA AP +P+ AP P PA +PA
Sbjct: 140 PAPALKPAPALKPVPAPKPAPAPAPAPAPKPAPAPAPKPAPAPAPAP-----KPAPAPA 193
Score = 55.1 bits (131), Expect = 7e-07
Identities = 30/55 (54%), Positives = 37/55 (66%), Gaps = 1/55 (1%)
Frame = -2
Query: 567 TPVPATSPAPAPAKV-KSKSPAPAPAPALAPVVSLSPSEAPGPSLSSLSPALSPA 406
TPVPA +PAPAPA ++ +PAPAPAPAL P +L P AP P +PA +PA
Sbjct: 116 TPVPAPAPAPAPAPTPEAPAPAPAPAPALKPAPALKPVPAPKP-----APAPAPA 165
Score = 54.3 bits (129), Expect = 1e-06
Identities = 27/68 (39%), Positives = 34/68 (49%)
Frame = -2
Query: 582 PPPALTPVPATSPAPAPAKVKSKSPAPAPAPALAPVVSLSPSEAPGPSLSSLSPALSPAA 403
P P P PA +PAP PA + PAPAPAPA P + +P+ P +PAL P
Sbjct: 154 PAPKPAPAPAPAPAPKPAPAPAPKPAPAPAPAPKPAPAPAPAPKPEKPAEKPAPALKPET 213
Query: 402 SA**WGRE 379
W +E
Sbjct: 214 PKTGWKQE 221
Score = 51.6 bits (122), Expect = 7e-06
Identities = 29/61 (47%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Frame = -2
Query: 585 TPPPALTPVPATSPAP-APAKVKSKSPAPAPAPALAPVVSLSPSEAPGPSLSSLSPALSP 409
TP PA P PA +P P APA + +PA PAPAL PV + P+ AP P+ + PA +P
Sbjct: 116 TPVPAPAPAPAPAPTPEAPAPAPAPAPALKPAPALKPVPAPKPAPAPAPA-PAPKPAPAP 174
Query: 408 A 406
A
Sbjct: 175 A 175
Score = 46.6 bits (109), Expect = 2e-04
Identities = 29/64 (45%), Positives = 36/64 (55%), Gaps = 5/64 (7%)
Frame = -2
Query: 582 PPPALTPVP-ATSPAPAPAKVKSKSPA----PAPAPALAPVVSLSPSEAPGPSLSSLSPA 418
P PA P P A +PAPAPA +PA PAP PA AP + +P AP P+ +PA
Sbjct: 123 PAPAPAPTPEAPAPAPAPAPALKPAPALKPVPAPKPAPAPAPAPAPKPAPAPA-PKPAPA 181
Query: 417 LSPA 406
+PA
Sbjct: 182 PAPA 185
Score = 32.7 bits (73), Expect = 3.5
Identities = 18/39 (46%), Positives = 25/39 (63%), Gaps = 3/39 (7%)
Frame = -2
Query: 516 KSPAPAPAPALAPV---VSLSPSEAPGPSLSSLSPALSP 409
++P PAPAPA AP + +P+ AP P+L +PAL P
Sbjct: 115 ETPVPAPAPAPAPAPTPEAPAPAPAPAPALKP-APALKP 152
>gb|AAF27709.1|AF071813_1 PspA [Streptococcus pneumoniae]
Length = 395
Score = 58.2 bits (139), Expect = 8e-08
Identities = 28/59 (47%), Positives = 33/59 (55%)
Frame = -2
Query: 582 PPPALTPVPATSPAPAPAKVKSKSPAPAPAPALAPVVSLSPSEAPGPSLSSLSPALSPA 406
P PA P PA +PAP PA +PAPAPAPA P + P+ AP P+ PA PA
Sbjct: 327 PAPAPAPAPAPAPAPKPAPAPKPAPAPAPAPAPKPAPAPKPAPAPAPAPKPEKPAEKPA 385
Score = 56.2 bits (134), Expect = 3e-07
Identities = 27/58 (46%), Positives = 34/58 (58%)
Frame = -2
Query: 582 PPPALTPVPATSPAPAPAKVKSKSPAPAPAPALAPVVSLSPSEAPGPSLSSLSPALSP 409
P PA P PA PAPAP + +PAPAP PA AP + +P+ AP P + PA +P
Sbjct: 331 PAPAPAPAPAPKPAPAPKPAPAPAPAPAPKPAPAPKPAPAPAPAPKPEKPAEKPAPAP 388
Score = 52.0 bits (123), Expect = 6e-06
Identities = 27/58 (46%), Positives = 33/58 (56%)
Frame = -2
Query: 579 PPALTPVPATSPAPAPAKVKSKSPAPAPAPALAPVVSLSPSEAPGPSLSSLSPALSPA 406
P P PA +PAPAPA +PAP PAPA AP + P+ AP P +PA +PA
Sbjct: 322 PETPAPAPAPAPAPAPAPAPKPAPAPKPAPAPAPAPAPKPAPAPKP-----APAPAPA 374
>gb|AAF27711.1|AF071815_1 PspA [Streptococcus pneumoniae]
Length = 408
Score = 58.2 bits (139), Expect = 8e-08
Identities = 28/59 (47%), Positives = 33/59 (55%)
Frame = -2
Query: 582 PPPALTPVPATSPAPAPAKVKSKSPAPAPAPALAPVVSLSPSEAPGPSLSSLSPALSPA 406
P PA P PA +PAP PA +PAPAPAPA P + P+ AP P+ PA PA
Sbjct: 338 PAPAPAPAPAPAPAPKPAPAPKPAPAPAPAPAPKPAPAPKPAPAPAPAPKPEKPAEKPA 396
Score = 56.6 bits (135), Expect = 2e-07
Identities = 29/59 (49%), Positives = 34/59 (57%)
Frame = -2
Query: 582 PPPALTPVPATSPAPAPAKVKSKSPAPAPAPALAPVVSLSPSEAPGPSLSSLSPALSPA 406
P PA P PA +PAPAPA + PAPAP PA AP + +P AP P PA +PA
Sbjct: 330 PAPAPAPAPAPAPAPAPAPAPAPKPAPAPKPAPAPAPAPAPKPAPAP-----KPAPAPA 383
Score = 56.2 bits (134), Expect = 3e-07
Identities = 27/58 (46%), Positives = 34/58 (58%)
Frame = -2
Query: 582 PPPALTPVPATSPAPAPAKVKSKSPAPAPAPALAPVVSLSPSEAPGPSLSSLSPALSP 409
P PA P PA PAPAP + +PAPAP PA AP + +P+ AP P + PA +P
Sbjct: 342 PAPAPAPAPAPKPAPAPKPAPAPAPAPAPKPAPAPKPAPAPAPAPKPEKPAEKPAPAP 399
Score = 56.2 bits (134), Expect = 3e-07
Identities = 28/60 (46%), Positives = 37/60 (61%)
Frame = -2
Query: 585 TPPPALTPVPATSPAPAPAKVKSKSPAPAPAPALAPVVSLSPSEAPGPSLSSLSPALSPA 406
TP PA P PA +PAPAPA + +P PAPAP AP + +P+ P P+ +PA +PA
Sbjct: 327 TPAPAPAPAPAPAPAPAPAPAPAPAPKPAPAPKPAPAPAPAPAPKPAPA-PKPAPAPAPA 385
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 569,363,047
Number of Sequences: 1393205
Number of extensions: 15816034
Number of successful extensions: 247539
Number of sequences better than 10.0: 4476
Number of HSP's better than 10.0 without gapping: 90041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181145
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
