Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002537A_C01 KMC002537A_c01
(572 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_188063.1| RNA-binding protein, putative; protein id: At3g... 162 3e-39
ref|NP_174556.1| RNA-binding protein, putative; protein id: At1g... 149 3e-35
gb|AAK53018.1|AF375434_1 At1g32790 [Arabidopsis thaliana] gi|250... 147 1e-34
ref|NP_175769.1| RNA-binding protein, putative; protein id: At1g... 147 1e-34
ref|NP_192799.1| RNA-binding protein RBP37; protein id: At4g1061... 138 4e-32
>ref|NP_188063.1| RNA-binding protein, putative; protein id: At3g14450.1 [Arabidopsis
thaliana] gi|11994215|dbj|BAB01337.1| contains
similarity to RNA-binding protein~gene_id:MOA2.5
[Arabidopsis thaliana]
Length = 327
Score = 162 bits (410), Expect = 3e-39
Identities = 73/97 (75%), Positives = 91/97 (93%)
Frame = -3
Query: 570 DEREMCSRTVYCTNIDKKVSQAEVKNFFEISCGEVTRIRLLGDHVHSTRIAFVEFAIAES 391
DEREMC+RT+YCTNIDKKVSQA+V+NFFE +CGEVTR+RLLGD +HSTRIAFVEFA+A+S
Sbjct: 231 DEREMCTRTIYCTNIDKKVSQADVRNFFESACGEVTRLRLLGDQLHSTRIAFVEFALADS 290
Query: 390 AIIALSCSGMLLGTQPVRVSPSKTPVRPRVPRPTTAH 280
A+ AL+CSGM++G+QP+RVSPSKTPVRPR+ RP + +
Sbjct: 291 ALSALNCSGMVVGSQPIRVSPSKTPVRPRITRPPSTN 327
Score = 66.2 bits (160), Expect = 3e-10
Identities = 38/84 (45%), Positives = 50/84 (59%)
Frame = -3
Query: 549 RTVYCTNIDKKVSQAEVKNFFEISCGEVTRIRLLGDHVHSTRIAFVEFAIAESAIIALSC 370
RTVY ++ID+ V++ + F +CG+V R+ GD R AFVEFA + A ALS
Sbjct: 141 RTVYVSDIDQSVTEEGLAGLFS-NCGQVVDCRICGDPHSVLRFAFVEFADDQGAHEALSL 199
Query: 369 SGMLLGTQPVRVSPSKTPVRPRVP 298
G +LG PVRV PSKT + P P
Sbjct: 200 GGTMLGFYPVRVLPSKTAILPVNP 223
>ref|NP_174556.1| RNA-binding protein, putative; protein id: At1g32790.1, supported
by cDNA: 40998., supported by cDNA: gi_14030686
[Arabidopsis thaliana] gi|25403416|pir||F86452 protein
F6N18.17 [imported] - Arabidopsis thaliana
gi|6714278|gb|AAF25974.1|AC017118_11 F6N18.17
[Arabidopsis thaliana]
Length = 358
Score = 149 bits (375), Expect = 3e-35
Identities = 70/92 (76%), Positives = 83/92 (90%)
Frame = -3
Query: 570 DEREMCSRTVYCTNIDKKVSQAEVKNFFEISCGEVTRIRLLGDHVHSTRIAFVEFAIAES 391
DEREMC+RT+YCTNIDKKV+Q++VK FFE CGEV R+RLLGD+ HSTRIAFVEF +AES
Sbjct: 263 DEREMCARTIYCTNIDKKVTQSDVKIFFESFCGEVYRLRLLGDYQHSTRIAFVEFVMAES 322
Query: 390 AIIALSCSGMLLGTQPVRVSPSKTPVRPRVPR 295
AI AL+CSG++LG+ P+RVSPSKTPVRPR PR
Sbjct: 323 AIAALNCSGVVLGSLPIRVSPSKTPVRPRSPR 354
Score = 71.6 bits (174), Expect = 6e-12
Identities = 36/88 (40%), Positives = 56/88 (62%)
Frame = -3
Query: 561 EMCSRTVYCTNIDKKVSQAEVKNFFEISCGEVTRIRLLGDHVHSTRIAFVEFAIAESAII 382
++ RTVY +++D++V++ ++ F +SCG+V R+ GD R AF+EF E A+
Sbjct: 169 DVIRRTVYVSDLDQQVTEEQLAGLF-VSCGQVVDCRICGDPNSVLRFAFIEFTDEEGAMT 227
Query: 381 ALSCSGMLLGTQPVRVSPSKTPVRPRVP 298
AL+ SG +LG PV+V PSKT + P P
Sbjct: 228 ALNLSGTMLGFYPVKVLPSKTAIAPVNP 255
>gb|AAK53018.1|AF375434_1 At1g32790 [Arabidopsis thaliana] gi|25090128|gb|AAN72236.1|
At1g32790/F6N18_9 [Arabidopsis thaliana]
Length = 201
Score = 147 bits (370), Expect = 1e-34
Identities = 69/92 (75%), Positives = 82/92 (89%)
Frame = -3
Query: 570 DEREMCSRTVYCTNIDKKVSQAEVKNFFEISCGEVTRIRLLGDHVHSTRIAFVEFAIAES 391
DE EMC+RT+YCTNIDKKV+Q++VK FFE CGEV R+RLLGD+ HSTRIAFVEF +AES
Sbjct: 106 DESEMCARTIYCTNIDKKVTQSDVKIFFEYFCGEVYRLRLLGDYQHSTRIAFVEFVMAES 165
Query: 390 AIIALSCSGMLLGTQPVRVSPSKTPVRPRVPR 295
AI AL+CSG++LG+ P+RVSPSKTPVRPR PR
Sbjct: 166 AIAALNCSGVVLGSLPIRVSPSKTPVRPRSPR 197
Score = 71.6 bits (174), Expect = 6e-12
Identities = 36/88 (40%), Positives = 56/88 (62%)
Frame = -3
Query: 561 EMCSRTVYCTNIDKKVSQAEVKNFFEISCGEVTRIRLLGDHVHSTRIAFVEFAIAESAII 382
++ RTVY +++D++V++ ++ F +SCG+V R+ GD R AF+EF E A+
Sbjct: 12 DVIRRTVYVSDLDQQVTEEQLAGLF-VSCGQVVDCRICGDPNSVLRFAFIEFTDEEGAMT 70
Query: 381 ALSCSGMLLGTQPVRVSPSKTPVRPRVP 298
AL+ SG +LG PV+V PSKT + P P
Sbjct: 71 ALNLSGTMLGFYPVKVLPSKTAIAPVNP 98
>ref|NP_175769.1| RNA-binding protein, putative; protein id: At1g53650.1 [Arabidopsis
thaliana] gi|25405657|pir||F96576 probable RNA-binding
protein, 40942-42923 [imported] - Arabidopsis thaliana
gi|12324022|gb|AAG51971.1|AC024260_9 RNA-binding
protein, putative; 40942-42923 [Arabidopsis thaliana]
Length = 314
Score = 147 bits (370), Expect = 1e-34
Identities = 66/92 (71%), Positives = 82/92 (88%)
Frame = -3
Query: 570 DEREMCSRTVYCTNIDKKVSQAEVKNFFEISCGEVTRIRLLGDHVHSTRIAFVEFAIAES 391
DEREMCSRT+YCTN+DK ++ +V FF+ +CGEVTR+RLLGD VHSTRIAFVEFA+AES
Sbjct: 218 DEREMCSRTIYCTNVDKNATEDDVNTFFQSACGEVTRLRLLGDQVHSTRIAFVEFAMAES 277
Query: 390 AIIALSCSGMLLGTQPVRVSPSKTPVRPRVPR 295
A+ AL+CSG++LG+QP+RVSPSKTPVR R+ R
Sbjct: 278 AVAALNCSGIVLGSQPIRVSPSKTPVRSRITR 309
Score = 65.9 bits (159), Expect = 4e-10
Identities = 37/84 (44%), Positives = 50/84 (59%)
Frame = -3
Query: 549 RTVYCTNIDKKVSQAEVKNFFEISCGEVTRIRLLGDHVHSTRIAFVEFAIAESAIIALSC 370
RTVY ++ID+ V++ + F SCG+V R+ GD R AFVEF+ + A ALS
Sbjct: 128 RTVYVSDIDQSVTEEGLAGLFS-SCGQVVDCRICGDPNSVLRFAFVEFSDDQGARSALSL 186
Query: 369 SGMLLGTQPVRVSPSKTPVRPRVP 298
G ++G PVRV PSKT + P P
Sbjct: 187 GGTMIGYYPVRVLPSKTAILPVNP 210
>ref|NP_192799.1| RNA-binding protein RBP37; protein id: At4g10610.1, supported by
cDNA: 2343., supported by cDNA: gi_1174152, supported by
cDNA: gi_14517527, supported by cDNA: gi_18700203
[Arabidopsis thaliana] gi|7488316|pir||T04196
RNA-binding protein RBP37 - Arabidopsis thaliana
gi|4115925|gb|AAD03436.1| contains similarity to RNA
recognition motifs (Pfam: PF00076, Score=5.5e-23, N=2)
[Arabidopsis thaliana] gi|4539439|emb|CAB40027.1|
RNA-binding protein [Arabidopsis thaliana]
gi|4959384|gb|AAD34325.1| RNA-binding protein
[Arabidopsis thaliana] gi|7267758|emb|CAB78184.1|
RNA-binding protein [Arabidopsis thaliana]
gi|14517528|gb|AAK62654.1| AT4g10610/T4F9_70
[Arabidopsis thaliana] gi|18700204|gb|AAL77712.1|
AT4g10610/T4F9_70 [Arabidopsis thaliana]
gi|21592407|gb|AAM64358.1| RNA-binding protein
[Arabidopsis thaliana]
Length = 336
Score = 138 bits (348), Expect = 4e-32
Identities = 66/93 (70%), Positives = 80/93 (85%), Gaps = 1/93 (1%)
Frame = -3
Query: 570 DEREMCSRTVYCTNIDKKVSQAEVKNFFEISCGEVTRIRLLGDHVHSTRIAFVEFAIAES 391
DEREMC+RT+YCTNIDKK++Q ++K FFE CGEV R+RLLGD+ H TRI FVEF +AES
Sbjct: 240 DEREMCARTIYCTNIDKKLTQTDIKLFFESVCGEVYRLRLLGDYHHPTRIGFVEFVMAES 299
Query: 390 AIIALSCSGMLLGTQPVRVSPSKTPVRPR-VPR 295
AI AL+CSG+LLG+ P+RVSPSKTPVR R +PR
Sbjct: 300 AIAALNCSGVLLGSLPIRVSPSKTPVRSRAIPR 332
Score = 64.3 bits (155), Expect = 1e-09
Identities = 36/88 (40%), Positives = 52/88 (58%)
Frame = -3
Query: 561 EMCSRTVYCTNIDKKVSQAEVKNFFEISCGEVTRIRLLGDHVHSTRIAFVEFAIAESAII 382
E+ RTVY ++ID++V++ ++ F I G+V R+ GD R AF+EF A
Sbjct: 146 EIIRRTVYVSDIDQQVTEEQLAGLF-IGFGQVVDCRICGDPNSVLRFAFIEFTDEVGART 204
Query: 381 ALSCSGMLLGTQPVRVSPSKTPVRPRVP 298
AL+ SG +LG PV+V PSKT + P P
Sbjct: 205 ALNLSGTMLGFYPVKVMPSKTAIAPVNP 232
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 479,189,217
Number of Sequences: 1393205
Number of extensions: 10249410
Number of successful extensions: 23373
Number of sequences better than 10.0: 102
Number of HSP's better than 10.0 without gapping: 22649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23352
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
