Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002535A_C01 KMC002535A_c01
(779 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567369.1| Expressed protein; protein id: At4g10925.1, sup... 189 5e-47
dbj|BAB90686.1| B1156H12.21 [Oryza sativa (japonica cultivar-gro... 176 3e-43
ref|NP_566347.1| expressed protein; protein id: At3g09250.1, sup... 67 3e-10
gb|ZP_00106329.1| hypothetical protein [Nostoc punctiforme] 58 2e-07
ref|NP_194127.1| putative protein; protein id: At4g23960.1 [Arab... 55 1e-06
>ref|NP_567369.1| Expressed protein; protein id: At4g10925.1, supported by cDNA:
11425., supported by cDNA: gi_16604596, supported by
cDNA: gi_20466026 [Arabidopsis thaliana]
gi|16604597|gb|AAL24155.1| unknown protein [Arabidopsis
thaliana] gi|20466027|gb|AAM20348.1| unknown protein
[Arabidopsis thaliana] gi|21536887|gb|AAM61219.1|
unknown [Arabidopsis thaliana]
gi|26450596|dbj|BAC42410.1| unknown protein [Arabidopsis
thaliana]
Length = 231
Score = 189 bits (479), Expect = 5e-47
Identities = 86/119 (72%), Positives = 102/119 (85%)
Frame = -3
Query: 777 EFFNIIRDKSIPAMSRFWLNADYVKCIHASGELFSGYNAVMQSWQLVFNWEQGLNFQVRD 598
EFF IIRD+++ AM+R WLN+DYVKCIHASGELFSGYN V+QSWQL FNWEQG +FQV
Sbjct: 114 EFFTIIRDRALQAMARLWLNSDYVKCIHASGELFSGYNEVIQSWQLCFNWEQGFDFQVHT 173
Query: 597 VRARVLTDMAWVTMKTFVDMDTGPFNVTNVFEFHNGRWYMVHHHSSVMNGEVDQ**IVH 421
VR R+LTDMAWVTMK ++++D GPF +TNVFEFHNGRW+MVHHHSSVM + DQ +VH
Sbjct: 174 VRTRILTDMAWVTMKAYLNVDGGPFLITNVFEFHNGRWHMVHHHSSVMLID-DQQVVVH 231
>dbj|BAB90686.1| B1156H12.21 [Oryza sativa (japonica cultivar-group)]
gi|20521465|dbj|BAB91973.1| OSJNBa0024F24.9 [Oryza
sativa (japonica cultivar-group)]
Length = 293
Score = 176 bits (447), Expect = 3e-43
Identities = 81/112 (72%), Positives = 95/112 (84%), Gaps = 4/112 (3%)
Frame = -3
Query: 777 EFFNIIRDKSIPAMSRFWLNADYVKCIHASGELFSGYNAVMQSWQLVFNW----EQGLNF 610
EF+NIIR+ S+PAMS FWLNADYVKCIHA+GELF+GYNAVM SW L+FNW QG+ F
Sbjct: 172 EFYNIIREGSLPAMSHFWLNADYVKCIHATGELFTGYNAVMDSWGLLFNWGQDGGQGIAF 231
Query: 609 QVRDVRARVLTDMAWVTMKTFVDMDTGPFNVTNVFEFHNGRWYMVHHHSSVM 454
Q+RDVRARVL ++AWV MK VD+D G F+VTNV+EF NGRWYMVHHHSS+M
Sbjct: 232 QLRDVRARVLGEVAWVNMKAHVDVDPGHFHVTNVYEFRNGRWYMVHHHSSLM 283
>ref|NP_566347.1| expressed protein; protein id: At3g09250.1, supported by cDNA:
32811., supported by cDNA: gi_17380785, supported by
cDNA: gi_20259606 [Arabidopsis thaliana]
gi|6478918|gb|AAF14023.1|AC011436_7 unknown protein
[Arabidopsis thaliana] gi|17380786|gb|AAL36223.1|
unknown protein [Arabidopsis thaliana]
gi|20259607|gb|AAM14160.1| unknown protein [Arabidopsis
thaliana] gi|21592811|gb|AAM64760.1| unknown
[Arabidopsis thaliana]
Length = 244
Score = 67.0 bits (162), Expect = 3e-10
Identities = 36/110 (32%), Positives = 60/110 (53%), Gaps = 5/110 (4%)
Frame = -3
Query: 774 FFNIIRDKSIPAMSRFWLNADYVKCIHASGELFSGYNAVMQSWQLVF-NWEQGLNFQVRD 598
F+ R+ + AM W + C+H + +GY+ VM+SW+LV+ N+E L +++D
Sbjct: 131 FYQSFRNGDLAAMQSLWSKSGNPCCVHPGAKGITGYDYVMESWELVWMNYEFPLLIELKD 190
Query: 597 VRARVLTDMAWVTMKTFV----DMDTGPFNVTNVFEFHNGRWYMVHHHSS 460
V V ++ +VT FV G V+NVFE +G+W++ HH+S
Sbjct: 191 VEVHVRGEVGYVTCMEFVKTKGSSSWGAQFVSNVFERIDGQWFICIHHAS 240
>gb|ZP_00106329.1| hypothetical protein [Nostoc punctiforme]
Length = 127
Score = 57.8 bits (138), Expect = 2e-07
Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 6/111 (5%)
Frame = -3
Query: 774 FFNIIRDKSIPAMSRFWLNADYVKCIHASGELFSGYNAVMQSWQLVFNWEQGLNFQVRDV 595
F+ K I MS W CIH + G+ + SW+ +F + +
Sbjct: 13 FYRAFERKDIEIMSTVWSQGTGSFCIHPGSNILRGWKEIRTSWEQIFKNTAYIEINTDII 72
Query: 594 RARVLTDMAWVTMKTFVDMDT------GPFNVTNVFEFHNGRWYMVHHHSS 460
++ ++A+V ++ V TNVF F G+WY+VHHH S
Sbjct: 73 ATEIVDNIAYVVLRENVFQVVSGRRLEAQSTATNVFHFLAGKWYLVHHHGS 123
>ref|NP_194127.1| putative protein; protein id: At4g23960.1 [Arabidopsis thaliana]
gi|7487586|pir||T08915 hypothetical protein T32A16.130 -
Arabidopsis thaliana gi|4972100|emb|CAB43896.1| putative
protein [Arabidopsis thaliana]
gi|7269245|emb|CAB81314.1| putative protein [Arabidopsis
thaliana]
Length = 122
Score = 54.7 bits (130), Expect = 1e-06
Identities = 21/37 (56%), Positives = 30/37 (80%)
Frame = -3
Query: 777 EFFNIIRDKSIPAMSRFWLNADYVKCIHASGELFSGY 667
+FF+I+ +S+P M+ WLN+DYVKC + SGELF+GY
Sbjct: 79 KFFSILDSRSLPRMTSLWLNSDYVKCFNGSGELFTGY 115
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 688,368,826
Number of Sequences: 1393205
Number of extensions: 15299954
Number of successful extensions: 35292
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 34004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35275
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 38655378996
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
