Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002533A_C01 KMC002533A_c01
(441 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD38147.1|AF139500_1 unknown [Prunus armeniaca] 112 1e-24
dbj|BAB68392.1| CmE8 [Cucumis melo] 110 5e-24
ref|NP_171933.1| putative 1-aminocyclopropane-1-carboxylate oxid... 107 3e-23
ref|NP_172150.1| oxidoreductase, putative; protein id: At1g06650... 105 1e-22
gb|AAK44137.1|AF370322_1 putative oxidoreductase [Arabidopsis th... 105 1e-22
>gb|AAD38147.1|AF139500_1 unknown [Prunus armeniaca]
Length = 370
Score = 112 bits (280), Expect = 1e-24
Identities = 55/86 (63%), Positives = 67/86 (76%)
Frame = -3
Query: 439 LLQLITNDRFQSVEHPVLANHVGPRISVACFFSPGNRLSSNPYGPIKELLTKDNPPKYRE 260
LLQLI+NDRF+SVEH VLAN PR+SVACFFS G YGPIKELL++DN PKYRE
Sbjct: 285 LLQLISNDRFRSVEHRVLANRACPRVSVACFFSTGFLALPRIYGPIKELLSEDNLPKYRE 344
Query: 259 TPISDYSAYYEKKGLDGTPALTPYQI 182
T + DY+A++ KGLDGT ALT +++
Sbjct: 345 TTVKDYNAHHYNKGLDGTCALTHFKL 370
>dbj|BAB68392.1| CmE8 [Cucumis melo]
Length = 367
Score = 110 bits (274), Expect = 5e-24
Identities = 54/86 (62%), Positives = 65/86 (74%)
Frame = -3
Query: 439 LLQLITNDRFQSVEHPVLANHVGPRISVACFFSPGNRLSSNPYGPIKELLTKDNPPKYRE 260
LLQLITNDRF S EH VLAN GPRISVA FFS G +S YGPIKELL++ NPPKY+E
Sbjct: 282 LLQLITNDRFVSSEHKVLANREGPRISVASFFSTGRLPTSKLYGPIKELLSEQNPPKYKE 341
Query: 259 TPISDYSAYYEKKGLDGTPALTPYQI 182
+ +Y+ Y+ +KGLDGT AL ++I
Sbjct: 342 ITVREYNIYFAEKGLDGTSALPHFKI 367
>ref|NP_171933.1| putative 1-aminocyclopropane-1-carboxylate oxidase; protein id:
At1g04380.1 [Arabidopsis thaliana]
gi|25285694|pir||E86175 hypothetical protein [imported]
- Arabidopsis thaliana gi|1903357|gb|AAB70438.1| Strong
similarity to Arabidopsis 2A6 (gb|X83096). [Arabidopsis
thaliana]
Length = 345
Score = 107 bits (268), Expect = 3e-23
Identities = 52/85 (61%), Positives = 65/85 (76%)
Frame = -3
Query: 436 LQLITNDRFQSVEHPVLANHVGPRISVACFFSPGNRLSSNPYGPIKELLTKDNPPKYRET 257
LQL+TND+F SV+H VL N VGPRIS+ACFFS +S YGPIKELL+++NPPKYR+
Sbjct: 261 LQLMTNDKFISVDHRVLTNRVGPRISIACFFSSSMNPNSTVYGPIKELLSEENPPKYRDF 320
Query: 256 PISDYSAYYEKKGLDGTPALTPYQI 182
I +YS Y +KGLDGT L+ Y+I
Sbjct: 321 TIPEYSKGYIEKGLDGTSHLSHYRI 345
>ref|NP_172150.1| oxidoreductase, putative; protein id: At1g06650.1, supported by
cDNA: gi_13878118 [Arabidopsis thaliana]
gi|23296334|gb|AAN13044.1| putative oxidoreductase
[Arabidopsis thaliana]
Length = 369
Score = 105 bits (263), Expect = 1e-22
Identities = 52/87 (59%), Positives = 66/87 (75%), Gaps = 1/87 (1%)
Frame = -3
Query: 439 LLQLITNDRFQSVEHPVLANHVG-PRISVACFFSPGNRLSSNPYGPIKELLTKDNPPKYR 263
LLQLITND+F S+EH VLAN R+SVACFF+ G R + YGPI+EL++++NPPKYR
Sbjct: 283 LLQLITNDKFISLEHRVLANRATRARVSVACFFTTGVRPNPRMYGPIRELVSEENPPKYR 342
Query: 262 ETPISDYSAYYEKKGLDGTPALTPYQI 182
ET I DY+ Y+ KGLDGT AL ++I
Sbjct: 343 ETTIKDYATYFNAKGLDGTSALLHFKI 369
>gb|AAK44137.1|AF370322_1 putative oxidoreductase [Arabidopsis thaliana]
Length = 369
Score = 105 bits (263), Expect = 1e-22
Identities = 52/87 (59%), Positives = 66/87 (75%), Gaps = 1/87 (1%)
Frame = -3
Query: 439 LLQLITNDRFQSVEHPVLANHVG-PRISVACFFSPGNRLSSNPYGPIKELLTKDNPPKYR 263
LLQLITND+F S+EH VLAN R+SVACFF+ G R + YGPI+EL++++NPPKYR
Sbjct: 283 LLQLITNDKFISLEHRVLANRATRARVSVACFFTTGVRPNPRMYGPIRELVSEENPPKYR 342
Query: 262 ETPISDYSAYYEKKGLDGTPALTPYQI 182
ET I DY+ Y+ KGLDGT AL ++I
Sbjct: 343 ETTIKDYATYFNAKGLDGTSALLHFKI 369
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 397,494,586
Number of Sequences: 1393205
Number of extensions: 8923358
Number of successful extensions: 20293
Number of sequences better than 10.0: 265
Number of HSP's better than 10.0 without gapping: 19930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20236
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 6689237688
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
