Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002532A_C01 KMC002532A_c01
(599 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM96992.1| putative protein [Arabidopsis thaliana] gi|231977... 66 1e-12
ref|NP_199650.1| putative protein; protein id: At5g48390.1 [Arab... 55 9e-07
ref|NP_194405.1| putative protein; protein id: At4g26750.1, supp... 33 3.7
dbj|BAC65899.1| OJ1710_H11.6 [Oryza sativa (japonica cultivar-gr... 33 3.7
gb|AAA91742.1| vSAG30 33 3.7
>gb|AAM96992.1| putative protein [Arabidopsis thaliana] gi|23197792|gb|AAN15423.1|
putative protein [Arabidopsis thaliana]
Length = 558
Score = 66.2 bits (160), Expect(2) = 1e-12
Identities = 39/74 (52%), Positives = 48/74 (64%), Gaps = 4/74 (5%)
Frame = -3
Query: 597 LVKRVAQLEKAKAEKKRETEATKPQPKRPRANGIVGYAPRF---SNIPSDNKSSYARVAD 427
L KR+ QLE+AKA+KKR TE KPQPKRPR G PR +N ++NK+ Y RV
Sbjct: 444 LHKRILQLEEAKADKKRATEPMKPQPKRPR-----GAQPRVTDNNNNINNNKTGYGRVIP 498
Query: 426 RYPPQYVYD-RPYM 388
PQYVYD RP++
Sbjct: 499 ERYPQYVYDNRPFL 512
Score = 28.1 bits (61), Expect(2) = 1e-12
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -1
Query: 374 PTIIALPPALWARLPITCSPTH-HGNYFGNGYQYQA 270
P + A PP T +P HGN++ N YQYQA
Sbjct: 515 PIMAAQPPPPPPPQTYTFNPAPAHGNFYANCYQYQA 550
>ref|NP_199650.1| putative protein; protein id: At5g48390.1 [Arabidopsis thaliana]
gi|8777369|dbj|BAA96959.1|
gene_id:MJE7.2~pir||C71412~similar to unknown protein
[Arabidopsis thaliana]
Length = 1337
Score = 54.7 bits (130), Expect = 9e-07
Identities = 32/58 (55%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Frame = -3
Query: 597 LVKRVAQLEKAKAEKKRETEATKPQPKRPRANGIVGYAPRF---SNIPSDNKSSYARV 433
L KR+ QLEKAKA+KKR TE KPQPKRPR G PR +N ++NK+ Y RV
Sbjct: 401 LHKRILQLEKAKADKKRATEPMKPQPKRPR-----GAQPRVTDNNNNINNNKTGYGRV 453
>ref|NP_194405.1| putative protein; protein id: At4g26750.1, supported by cDNA:
gi_15081653, supported by cDNA: gi_20334817 [Arabidopsis
thaliana] gi|7485348|pir||T04798 hypothetical protein
F10M23.90 - Arabidopsis thaliana
gi|4455198|emb|CAB36521.1| putative protein [Arabidopsis
thaliana] gi|7269527|emb|CAB79530.1| putative protein
[Arabidopsis thaliana] gi|15081654|gb|AAK82482.1|
AT4g26750/F10M23_90 [Arabidopsis thaliana]
gi|20334818|gb|AAM16165.1| AT4g26750/F10M23_90
[Arabidopsis thaliana]
Length = 421
Score = 32.7 bits (73), Expect = 3.7
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = -3
Query: 483 PRFSNIPSDNKSSYARVADRYPPQYVYDRPYMYPAPADNHCPASCSLGTA 334
P F + PS ++SS + YP Y PY Y +P P+S S +A
Sbjct: 290 PNFQSYPSFSESSLPSTSPHYPSHYQNPEPY-YSSPHSAPAPSSTSFSSA 338
>dbj|BAC65899.1| OJ1710_H11.6 [Oryza sativa (japonica cultivar-group)]
Length = 637
Score = 32.7 bits (73), Expect = 3.7
Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 9/100 (9%)
Frame = -3
Query: 597 LVKRVAQLEKAKAEKKRETEATKPQPKRPRANGI---------VGYAPRFSNIPSDNKSS 445
L KRVA+L K+K EK R EA + K+PR G VG A R + P+
Sbjct: 445 LQKRVAEL-KSKGEK-RPLEAGRHNAKKPRTFGNSAARRPPNPVGSAGRRPSGPAGTWQR 502
Query: 444 YARVADRYPPQYVYDRPYMYPAPADNHCPASCSLGTATYN 325
YP +Y + Y Y AP+ + P + + + Y+
Sbjct: 503 PPPPMPSYPDRYGHADRYHYTAPSATYDPPAYASYSEPYS 542
>gb|AAA91742.1| vSAG30
Length = 320
Score = 32.7 bits (73), Expect = 3.7
Identities = 22/102 (21%), Positives = 46/102 (44%)
Frame = -3
Query: 588 RVAQLEKAKAEKKRETEATKPQPKRPRANGIVGYAPRFSNIPSDNKSSYARVADRYPPQY 409
++ +LE +KR + + K Q + A G+ + +S++ ++ DR+
Sbjct: 157 QIQRLEMGIENRKRRSTSVKEQVQGLSATGL--------EVKEGKRSAFVKIGDRWWQPG 208
Query: 408 VYDRPYMYPAPADNHCPASCSLGTATYNMLSYSSWKLLWKWL 283
Y RPY+Y P D P + ++ + +K+L++ L
Sbjct: 209 TYRRPYIY-RPTDAPLPYTGRYDLNFDRWVTVNGYKVLYRSL 249
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 476,389,857
Number of Sequences: 1393205
Number of extensions: 10056592
Number of successful extensions: 28734
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 27392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28697
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23426109484
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
