Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002531A_C01 KMC002531A_c01
(532 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T01561 hypothetical protein A_TM018A10.22 - Arabidopsis tha... 37 0.11
gb|EAA35680.1| predicted protein [Neurospora crassa] 37 0.11
ref|NP_567194.1| coded for by A. thaliana cDNA T45454; protein i... 36 0.25
gb|ZP_00023542.1| hypothetical protein [Ralstonia metallidurans] 36 0.25
ref|NP_499703.1| Cuticle collagen family member [Caenorhabditis ... 36 0.32
>pir||T01561 hypothetical protein A_TM018A10.22 - Arabidopsis thaliana
gi|2252866|gb|AAB62864.1| contains region of similarity
to SYT [Arabidopsis thaliana] gi|7267424|emb|CAB80894.1|
contains region of similarity to SYT, coded for by A.
thaliana cDNA T45454~similarity to~contains EST
gb:AI993161.1, T45454, AA394509 [Arabidopsis thaliana]
Length = 230
Score = 37.4 bits (85), Expect = 0.11
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -3
Query: 524 HPMHSNEAAHGGGSSGGPPSSAGPNDARGGNKQDASETGTAGGDG 390
H MH +E A + S GPNDA GG K D + +G DG
Sbjct: 168 HQMHHHETALAANNGNIWFYSTGPNDASGGGKPDGTNMSQSGADG 212
>gb|EAA35680.1| predicted protein [Neurospora crassa]
Length = 283
Score = 37.4 bits (85), Expect = 0.11
Identities = 17/35 (48%), Positives = 19/35 (53%)
Frame = +1
Query: 391 PSPPAVPVSEASCLFPPRASFGPADEGGPPLLPPP 495
P PP P S S PP++S PA GGP PPP
Sbjct: 106 PPPPPPPASSGSPPPPPQSSVPPASSGGPSAPPPP 140
>ref|NP_567194.1| coded for by A. thaliana cDNA T45454; protein id: At4g00850.1,
supported by cDNA: gi_14190376, supported by cDNA:
gi_15450536 [Arabidopsis thaliana]
gi|14190377|gb|AAK55669.1|AF378866_1
AT4g00850/A_TM018A10_22 [Arabidopsis thaliana]
gi|15450537|gb|AAK96446.1| AT4g00850/A_TM018A10_22
[Arabidopsis thaliana] gi|21539894|gb|AAM52883.1|
putative transcription co-activator [Arabidopsis
thaliana]
Length = 223
Score = 36.2 bits (82), Expect = 0.25
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = -3
Query: 524 HPMHSNEAAHGGGSSGGPPSSAGPNDARGGNKQDASETGTAGGDG 390
H MH +E A ++AGPNDA GG K D + +G DG
Sbjct: 168 HQMHHHETALAA-------NNAGPNDASGGGKPDGTNMSQSGADG 205
>gb|ZP_00023542.1| hypothetical protein [Ralstonia metallidurans]
Length = 229
Score = 36.2 bits (82), Expect = 0.25
Identities = 19/53 (35%), Positives = 25/53 (46%), Gaps = 3/53 (5%)
Frame = -3
Query: 530 GMHPMHSNEAAHGGGSSGG---PPSSAGPNDARGGNKQDASETGTAGGDGHRK 381
G P+ S+ GGG GG P + G RGG +A G AGG+ R+
Sbjct: 147 GPAPLTSHTTKFGGGMGGGLRGPGAGGGRGGGRGGKAGNAGNAGNAGGNRQRR 199
>ref|NP_499703.1| Cuticle collagen family member [Caenorhabditis elegans]
gi|7499104|pir||T20906 hypothetical protein F14F7.1 -
Caenorhabditis elegans gi|3875920|emb|CAB04111.1|
Hypothetical protein F14F7.1 [Caenorhabditis elegans]
Length = 305
Score = 35.8 bits (81), Expect = 0.32
Identities = 19/51 (37%), Positives = 23/51 (44%), Gaps = 8/51 (15%)
Frame = -3
Query: 503 AAHGGGSSGGPPSSAGPNDARG--------GNKQDASETGTAGGDGHRKLC 375
A H G S GG P AGP A G G+ G +GG G+R +C
Sbjct: 235 AGHPGSSGGGRPGPAGPKGAPGQPGRPGPDGHPGQPGRPGQSGGSGNRGVC 285
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 456,372,670
Number of Sequences: 1393205
Number of extensions: 10162976
Number of successful extensions: 61504
Number of sequences better than 10.0: 201
Number of HSP's better than 10.0 without gapping: 39966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58201
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17596710992
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
