Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002530A_C05 KMC002530A_c05
(794 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB14910.1| unnamed protein product [Homo sapiens] 32 8.2
>dbj|BAB14910.1| unnamed protein product [Homo sapiens]
Length = 305
Score = 32.3 bits (72), Expect = 8.2
Identities = 26/54 (48%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Frame = +1
Query: 442 LANQPVI*SHPLKLIQILPFPV--AQTLSLKENFPEATP--KANLNQTL-KPLL 588
L QP I PL L QILPFP+ A TL L N+ P KA L+ T PLL
Sbjct: 14 LLRQPPIMQPPLDLKQILPFPLEPAPTLGLFSNYSTMDPVQKAVLSHTFGGPLL 67
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 645,208,869
Number of Sequences: 1393205
Number of extensions: 13892688
Number of successful extensions: 33410
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 32273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33389
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 40055936206
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
