Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002528A_C03 KMC002528A_c03
(1206 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_195633.1| AtRer1A; protein id: At4g39220.1, supported by ... 299 7e-80
pir||T51628 endoplasmatic reticulum retrieval protein Rer1B [val... 296 3e-79
ref|NP_179754.1| AtRer1B; protein id: At2g21600.1, supported by ... 296 4e-79
dbj|BAB16908.1| putative Rer1A protein (AtRer1A) [Oryza sativa (... 260 3e-68
ref|NP_565550.1| putative integral membrane protein; protein id:... 225 9e-58
>ref|NP_195633.1| AtRer1A; protein id: At4g39220.1, supported by cDNA: 21466.,
supported by cDNA: gi_14994254, supported by cDNA:
gi_4160667 [Arabidopsis thaliana]
gi|6225938|sp|O48670|RERA_ARATH RER1A protein (AtRER1A)
gi|7488293|pir||T08570 endoplasmatic reticulum retrieval
protein Rer1A [validated] - Arabidopsis thaliana
gi|2865175|dbj|BAA24803.1| AtRer1A [Arabidopsis thaliana]
gi|4914434|emb|CAB43637.1| AtRer1A [Arabidopsis thaliana]
gi|7270905|emb|CAB80585.1| AtRer1A [Arabidopsis thaliana]
gi|14994255|gb|AAK73262.1| AtRer1A [Arabidopsis thaliana]
gi|21554242|gb|AAM63317.1| AtRer1A [Arabidopsis thaliana]
gi|24030322|gb|AAN41329.1| putative AtRer1A protein
[Arabidopsis thaliana]
Length = 191
Score = 299 bits (765), Expect = 7e-80
Identities = 145/194 (74%), Positives = 163/194 (83%), Gaps = 1/194 (0%)
Frame = -1
Query: 1023 DSISMEGGSASSPVTQYWQQYSMLFQHYLDKSTPHAAYRWIGTAILASIYILRVFYLQGF 844
D + GS ++PV Q + ++QHYLDK+TPHA YRWIGT ++A IY LRV+Y+QGF
Sbjct: 2 DESGGDSGSVATPVQQRAHEAWRIYQHYLDKTTPHANYRWIGTLVVALIYCLRVYYIQGF 61
Query: 843 YIVSYGLGIYLLNLLIGFLSPLVDPQLEP-SDSAVLPTKGSDEFKPFIRRLPEFKFWYSY 667
YI++YGLGIYLLNLLIGFLSPLVDP+ SD LPT+GSDEFKPFIRRLPEFKFWYS
Sbjct: 62 YIIAYGLGIYLLNLLIGFLSPLVDPEAGGVSDGPSLPTRGSDEFKPFIRRLPEFKFWYSM 121
Query: 666 TKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPLNLGKQKYG 487
TKAFCIAF+MTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIP + GKQKYG
Sbjct: 122 TKAFCIAFLMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPFSFGKQKYG 181
Query: 486 GKKSSASSSGSRAD 445
G+ SSSGSRAD
Sbjct: 182 GR----SSSGSRAD 191
>pir||T51628 endoplasmatic reticulum retrieval protein Rer1B [validated] -
Arabidopsis thaliana gi|2865177|dbj|BAA24804.1| AtRer1B
[Arabidopsis thaliana] gi|21617987|gb|AAM67037.1| AtRer1B
[Arabidopsis thaliana]
Length = 195
Score = 296 bits (759), Expect = 3e-79
Identities = 140/189 (74%), Positives = 164/189 (86%), Gaps = 1/189 (0%)
Frame = -1
Query: 1008 EGGSASSPVTQYWQQYSMLFQHYLDKSTPHAAYRWIGTAILASIYILRVFYLQGFYIVSY 829
+ GS ++PV + + ++Q+YLDK+TPH+ RWIGT ++ IY LRV+ + GFYI+SY
Sbjct: 7 DSGSMATPVQKKVHEAWRVYQYYLDKTTPHSTNRWIGTLVVFLIYCLRVYSIHGFYIISY 66
Query: 828 GLGIYLLNLLIGFLSPLVDPQLEPSDSAVLPTKGSDEFKPFIRRLPEFKFWYSYTKAFCI 649
GLGIYLLNLLIGFLSPLVDP+LE SD A LPT+GSDEFKPFIRRLPEFKFWYS TKAFCI
Sbjct: 67 GLGIYLLNLLIGFLSPLVDPELEVSDGATLPTRGSDEFKPFIRRLPEFKFWYSMTKAFCI 126
Query: 648 AFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPLNLGKQKYGGKKSSA 469
AF+MTFFSVFDVPVFWPILLCYW+VLFVLTMRRQIAHMIK+KYIP ++GKQKY G+KSSA
Sbjct: 127 AFLMTFFSVFDVPVFWPILLCYWVVLFVLTMRRQIAHMIKHKYIPFSIGKQKYSGRKSSA 186
Query: 468 SS-SGSRAD 445
+S GSRAD
Sbjct: 187 NSGGGSRAD 195
>ref|NP_179754.1| AtRer1B; protein id: At2g21600.1, supported by cDNA: 92908.,
supported by cDNA: gi_16323080, supported by cDNA:
gi_4160668 [Arabidopsis thaliana]
gi|21431803|sp|O48671|RERB_ARATH RER1B protein (AtRER1B)
gi|25348191|pir||B84603 AtRer1B [imported] - Arabidopsis
thaliana gi|4567230|gb|AAD23645.1| AtRer1B [Arabidopsis
thaliana] gi|16323081|gb|AAL15275.1| At2g21600/F2G1.13
[Arabidopsis thaliana] gi|21360413|gb|AAM47322.1|
At2g21600/F2G1.13 [Arabidopsis thaliana]
Length = 195
Score = 296 bits (758), Expect = 4e-79
Identities = 140/189 (74%), Positives = 163/189 (86%), Gaps = 1/189 (0%)
Frame = -1
Query: 1008 EGGSASSPVTQYWQQYSMLFQHYLDKSTPHAAYRWIGTAILASIYILRVFYLQGFYIVSY 829
+ GS ++PV + + ++Q+YLDK+TPH+ RWIGT + IY LRV+ + GFYI+SY
Sbjct: 7 DSGSMATPVQKKVHEAWRVYQYYLDKTTPHSTNRWIGTLVFFLIYCLRVYSIHGFYIISY 66
Query: 828 GLGIYLLNLLIGFLSPLVDPQLEPSDSAVLPTKGSDEFKPFIRRLPEFKFWYSYTKAFCI 649
GLGIYLLNLLIGFLSPLVDP+LE SD A LPT+GSDEFKPFIRRLPEFKFWYS TKAFCI
Sbjct: 67 GLGIYLLNLLIGFLSPLVDPELEVSDGATLPTRGSDEFKPFIRRLPEFKFWYSMTKAFCI 126
Query: 648 AFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPLNLGKQKYGGKKSSA 469
AF+MTFFSVFDVPVFWPILLCYW+VLFVLTMRRQIAHMIK+KYIP ++GKQKY G+KSSA
Sbjct: 127 AFLMTFFSVFDVPVFWPILLCYWVVLFVLTMRRQIAHMIKHKYIPFSIGKQKYSGRKSSA 186
Query: 468 SS-SGSRAD 445
+S GSRAD
Sbjct: 187 NSGGGSRAD 195
>dbj|BAB16908.1| putative Rer1A protein (AtRer1A) [Oryza sativa (japonica
cultivar-group)]
Length = 522
Score = 260 bits (664), Expect = 3e-68
Identities = 124/181 (68%), Positives = 146/181 (80%), Gaps = 4/181 (2%)
Frame = -1
Query: 1023 DSISMEGGSASSPVTQYWQ-QYSMLFQHYLDKSTPHAAYRWIGTAILASIYILRVFYLQG 847
D + G + ++ W+ S FQ+YLD+STPHA RWIGT +A+IY LRV+ +QG
Sbjct: 228 DGAADSGTAGAAAAAAKWRTDASRAFQYYLDRSTPHATGRWIGTLAVAAIYALRVYLVQG 287
Query: 846 FYIVSYGLGIYLLNLLIGFLSPLVDPQLEP---SDSAVLPTKGSDEFKPFIRRLPEFKFW 676
FYIV+YGLGIYLLNLLIGFLSP+VDP+ SD LPT+GSDEFKPFIRRLPEFKFW
Sbjct: 288 FYIVTYGLGIYLLNLLIGFLSPMVDPEAHAAASSDGPALPTRGSDEFKPFIRRLPEFKFW 347
Query: 675 YSYTKAFCIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPLNLGKQ 496
Y+ TKAF IAFVMTFFSVFDVPVFWPILLCYW+VLFVLTM+RQI HMIKYKY+P ++GKQ
Sbjct: 348 YAITKAFLIAFVMTFFSVFDVPVFWPILLCYWVVLFVLTMKRQIVHMIKYKYVPFSVGKQ 407
Query: 495 K 493
+
Sbjct: 408 Q 408
>ref|NP_565550.1| putative integral membrane protein; protein id: At2g23310.1,
supported by cDNA: 25204., supported by cDNA:
gi_17978977, supported by cDNA: gi_20453334, supported by
cDNA: gi_4163829 [Arabidopsis thaliana]
gi|6226764|sp|Q9ZWI7|RERC_ARATH RER1C protein (AtRER1C)
gi|11281670|pir||T51629 endoplasmatic reticulum retrieval
protein RER1C [validated] - Arabidopsis thaliana
gi|3769300|dbj|BAA33862.1| AtRER1C [Arabidopsis thaliana]
gi|17978978|gb|AAL47450.1| At2g23310/T20D16.6
[Arabidopsis thaliana] gi|20196927|gb|AAB87102.2|
putative integral membrane protein [Arabidopsis thaliana]
gi|20453335|gb|AAM19906.1| At2g23310/T20D16.6
[Arabidopsis thaliana] gi|21554351|gb|AAM63458.1|
putative integral membrane protein [Arabidopsis thaliana]
Length = 212
Score = 225 bits (574), Expect = 9e-58
Identities = 101/185 (54%), Positives = 133/185 (71%)
Frame = -1
Query: 1014 SMEGGSASSPVTQYWQQYSMLFQHYLDKSTPHAAYRWIGTAILASIYILRVFYLQGFYIV 835
S + S + V + +S QH LDK+ PH YRWI + IYI+RV++++GFYI+
Sbjct: 27 SSDSSSPADAVNRLIHAFSQRQQHLLDKTVPHVLYRWIACLCVVLIYIVRVYFVEGFYII 86
Query: 834 SYGLGIYLLNLLIGFLSPLVDPQLEPSDSAVLPTKGSDEFKPFIRRLPEFKFWYSYTKAF 655
+Y +GIYLLNL+I FLSP DP+ + LPT+ SDE++PF+RRLPEFKFW S +AF
Sbjct: 87 TYAIGIYLLNLIIAFLSPQEDPEASLTSGGSLPTRRSDEYRPFVRRLPEFKFWLSIIRAF 146
Query: 654 CIAFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPLNLGKQKYGGKKS 475
I F+MTFF VFDVPVFWPILL YW++LF LTMR+QI HMIKY+Y+P + GK++YG K +
Sbjct: 147 IIGFMMTFFEVFDVPVFWPILLFYWVMLFFLTMRKQIQHMIKYRYVPFSFGKKQYGKKPA 206
Query: 474 SASSS 460
SS
Sbjct: 207 PTESS 211
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 990,998,949
Number of Sequences: 1393205
Number of extensions: 21950279
Number of successful extensions: 58522
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 55328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58470
length of database: 448,689,247
effective HSP length: 126
effective length of database: 273,145,417
effective search space used: 75114989675
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
