Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002525A_C01 KMC002525A_c01
(419 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG27937.1|AF179895_1 erythrocyte binding domain M1 [Plasmodi... 32 2.4
gb|AAL10508.1| maebl [Plasmodium vivax] 32 2.4
ref|NP_702378.1| hypothetical protein [Plasmodium falciparum 3D7... 31 3.1
ref|NP_717427.1| ATP-dependent helicase DinG [Shewanella oneiden... 31 3.1
dbj|BAA92154.1| voltage-gated sodium channel alpha subunit NaT/S... 30 7.0
>gb|AAG27937.1|AF179895_1 erythrocyte binding domain M1 [Plasmodium vivax]
Length = 324
Score = 31.6 bits (70), Expect = 2.4
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Frame = +3
Query: 123 HTIFPYSTYEYEVKM*SRVYRDDGS--SAPK*KLRNKYLALRKNKLKDSNDFKITHPLHQ 296
H++ EY++ R+YR S S K LRNKYL + L + +PLH
Sbjct: 65 HSLLIKKEQEYDMCF-KRIYRHMQSIRSNKKRTLRNKYLHFGWHGLGGRLGSNMNYPLHD 123
Query: 297 VKPIPAKMTSKMQCS 341
P + +T KM+ S
Sbjct: 124 YNPSESHVTRKMRFS 138
>gb|AAL10508.1| maebl [Plasmodium vivax]
Length = 1866
Score = 31.6 bits (70), Expect = 2.4
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Frame = +3
Query: 123 HTIFPYSTYEYEVKM*SRVYRDDGS--SAPK*KLRNKYLALRKNKLKDSNDFKITHPLHQ 296
H++ EY++ R+YR S S K LRNKYL + L + +PLH
Sbjct: 152 HSLLIKKEQEYDMCF-KRIYRHMQSIRSNKKRTLRNKYLHFGWHGLGGRLGSNMNYPLHD 210
Query: 297 VKPIPAKMTSKMQCS 341
P + +T KM+ S
Sbjct: 211 YNPSESHVTRKMRFS 225
>ref|NP_702378.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23497561|gb|AAN37102.1|AE014824_21 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 1304
Score = 31.2 bits (69), Expect = 3.1
Identities = 19/48 (39%), Positives = 27/48 (55%)
Frame = +3
Query: 222 NKYLALRKNKLKDSNDFKITHPLHQVKPIPAKMTSKMQCSPNKVHRQK 365
N++L KNK K ++DFK + I K TS M CSP+ H++K
Sbjct: 74 NEHLNELKNKKKRNHDFKDNKRKLKSNDINCKNTSDM-CSPSFFHKEK 120
>ref|NP_717427.1| ATP-dependent helicase DinG [Shewanella oneidensis MR-1]
gi|24347650|gb|AAN54871.1|AE015625_14 ATP-dependent
helicase DinG [Shewanella oneidensis MR-1]
Length = 690
Score = 31.2 bits (69), Expect = 3.1
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 222 NKYLALRKNKLKDSNDFKITHPLHQVK-PIPAKMTSKMQCSPNKVHRQKPPSRVCPF 389
N +A+ + L D N+ + + + PIP + ++ C + HRQ R CPF
Sbjct: 148 NSQIAMLQTLLNDVNEGRWNGEIDTLSTPIPDHLWQQIACDKHSCHRQLASHRNCPF 204
>dbj|BAA92154.1| voltage-gated sodium channel alpha subunit NaT/Scn11a [Mus musculus]
Length = 1765
Score = 30.0 bits (66), Expect = 7.0
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = -3
Query: 270 NRWNLSTCFYVMLSIYFSTFISGLKTHHLCIPVI 169
N WNL C V+LSI ST +SGL+ ++ P +
Sbjct: 1408 NGWNLFDCVVVVLSI-ISTLVSGLENSNVFPPTL 1440
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 371,517,853
Number of Sequences: 1393205
Number of extensions: 7781126
Number of successful extensions: 17686
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 17334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17683
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 6923296128
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
