Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002518A_C01 KMC002518A_c01
(494 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_191763.1| hypothetical protein; protein id: At3g62040.1 [... 106 2e-22
emb|CAB85628.1| putative ripening-related protein [Vitis vinifera] 95 5e-19
dbj|BAC07120.1| contains ESTs AU088644(E60087),AU030671(E60087)~... 91 9e-18
ref|NP_200757.1| putative ripening-related protein - like; prote... 90 2e-17
dbj|BAA97484.1| ripening-related protein-like; hydrolase-like [A... 90 2e-17
>ref|NP_191763.1| hypothetical protein; protein id: At3g62040.1 [Arabidopsis
thaliana] gi|11279021|pir||T47996 hypothetical protein
F21F14.210 - Arabidopsis thaliana
gi|6899902|emb|CAB71911.1| putative protein [Arabidopsis
thaliana]
Length = 249
Score = 106 bits (264), Expect = 2e-22
Identities = 55/91 (60%), Positives = 71/91 (77%), Gaps = 1/91 (1%)
Frame = -1
Query: 494 EAFEAAIRIAN-VDPKKTIFFDDSTRNIASAKVAGLHTVMVGRSDLVPGANHALNSIHNI 318
EAFEAAIRIA+ VDP+KTIFFDDS RNIASAK GL TV VG S LVPGA++AL+SIHNI
Sbjct: 159 EAFEAAIRIADIVDPRKTIFFDDSIRNIASAKATGLKTVFVGESVLVPGADYALSSIHNI 218
Query: 317 REALPEIWEVEEDSQQPNDPILSSGSYSPCI 225
+EA+P++WE +D + +PI+ + + +
Sbjct: 219 KEAIPDLWEDNKDEKL--EPIVQQAAVATMV 247
>emb|CAB85628.1| putative ripening-related protein [Vitis vinifera]
Length = 301
Score = 94.7 bits (234), Expect = 5e-19
Identities = 43/73 (58%), Positives = 58/73 (78%)
Frame = -1
Query: 491 AFEAAIRIANVDPKKTIFFDDSTRNIASAKVAGLHTVMVGRSDLVPGANHALNSIHNIRE 312
A E A+RIAN++P++T+FF+DS RNI S K GLHTV+VG S + GA+ AL SIHN+RE
Sbjct: 214 AIERALRIANINPQRTLFFEDSARNIQSGKRVGLHTVLVGTSQRIKGADFALESIHNMRE 273
Query: 311 ALPEIWEVEEDSQ 273
ALPE+WE ++ S+
Sbjct: 274 ALPELWEGDKKSE 286
>dbj|BAC07120.1| contains ESTs AU088644(E60087),AU030671(E60087)~ripening-related
protein-like [Oryza sativa (japonica cultivar-group)]
Length = 277
Score = 90.5 bits (223), Expect = 9e-18
Identities = 44/75 (58%), Positives = 54/75 (71%)
Frame = -1
Query: 494 EAFEAAIRIANVDPKKTIFFDDSTRNIASAKVAGLHTVMVGRSDLVPGANHALNSIHNIR 315
E+ EA I IA +D KT+FFDDS RNIA+ K AG HTV+VG S V GA+ AL SIHNI+
Sbjct: 182 ESMEAVIEIAKLDAMKTVFFDDSPRNIAAGKAAGFHTVIVGSSAAVAGADVALESIHNIK 241
Query: 314 EALPEIWEVEEDSQQ 270
EA+PE+WE + Q
Sbjct: 242 EAVPELWEAAGEHVQ 256
>ref|NP_200757.1| putative ripening-related protein - like; protein id: At5g59490.1
[Arabidopsis thaliana]
Length = 266
Score = 89.7 bits (221), Expect = 2e-17
Identities = 39/66 (59%), Positives = 53/66 (80%)
Frame = -1
Query: 491 AFEAAIRIANVDPKKTIFFDDSTRNIASAKVAGLHTVMVGRSDLVPGANHALNSIHNIRE 312
AFE A IA ++P KT+FFDDSTRNI + K GLHTV+VG+S+ + G+++AL SIHN++E
Sbjct: 174 AFEKAFDIAQLNPHKTLFFDDSTRNIQTGKAVGLHTVLVGKSEKIDGSDYALESIHNMKE 233
Query: 311 ALPEIW 294
A PE+W
Sbjct: 234 AFPELW 239
>dbj|BAA97484.1| ripening-related protein-like; hydrolase-like [Arabidopsis
thaliana]
Length = 279
Score = 89.7 bits (221), Expect = 2e-17
Identities = 39/66 (59%), Positives = 53/66 (80%)
Frame = -1
Query: 491 AFEAAIRIANVDPKKTIFFDDSTRNIASAKVAGLHTVMVGRSDLVPGANHALNSIHNIRE 312
AFE A IA ++P KT+FFDDSTRNI + K GLHTV+VG+S+ + G+++AL SIHN++E
Sbjct: 187 AFEKAFDIAQLNPHKTLFFDDSTRNIQTGKAVGLHTVLVGKSEKIDGSDYALESIHNMKE 246
Query: 311 ALPEIW 294
A PE+W
Sbjct: 247 AFPELW 252
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 408,814,512
Number of Sequences: 1393205
Number of extensions: 8230166
Number of successful extensions: 20035
Number of sequences better than 10.0: 76
Number of HSP's better than 10.0 without gapping: 19582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20032
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14493193850
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
