Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002517A_C01 KMC002517A_c01
(532 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC16088.2| DnaJ like protein [Lycopersicon esculentum] 133 1e-30
gb|AAF05720.1|AF191497_1 DnaJ-like protein [Nicotiana tabacum] 133 1e-30
ref|NP_187503.1| putative heat shock protein; protein id: At3g08... 131 4e-30
gb|AAM67147.1| putative heat shock protein [Arabidopsis thaliana] 131 4e-30
ref|NP_195759.1| heat shock protein 40-like; protein id: At5g013... 130 1e-29
>emb|CAC16088.2| DnaJ like protein [Lycopersicon esculentum]
Length = 342
Score = 133 bits (335), Expect = 1e-30
Identities = 66/93 (70%), Positives = 75/93 (79%)
Frame = -2
Query: 531 DIVFIVDEKPHNVFTRDGNDLVVTQKISLTEDEALTGFTFPLTTLDGRCLPIAINNGTDP 352
D+VFI+DEKPH VF+RDGNDL+VTQKI L E ALTG T LTTLDGR L I INN P
Sbjct: 236 DLVFIIDEKPHKVFSRDGNDLIVTQKIPLAE--ALTGTTVQLTTLDGRNLTIPINNVIQP 293
Query: 351 NYEKVITGEGMPISKDPSKRGNLRIKFNIKFPS 253
NYE + GEGMP+ KDPSK+GNLRIKF+IKFP+
Sbjct: 294 NYEHIAPGEGMPLPKDPSKKGNLRIKFDIKFPA 326
>gb|AAF05720.1|AF191497_1 DnaJ-like protein [Nicotiana tabacum]
Length = 342
Score = 133 bits (335), Expect = 1e-30
Identities = 65/92 (70%), Positives = 76/92 (81%)
Frame = -2
Query: 531 DIVFIVDEKPHNVFTRDGNDLVVTQKISLTEDEALTGFTFPLTTLDGRCLPIAINNGTDP 352
D+VFI+DEKPH VF+RDGNDL+VTQKISL E ALTG T LTTLDGR L I +N+ P
Sbjct: 236 DLVFIIDEKPHRVFSRDGNDLIVTQKISLVE--ALTGTTVQLTTLDGRNLTIPVNSVIQP 293
Query: 351 NYEKVITGEGMPISKDPSKRGNLRIKFNIKFP 256
NYE V+ GEGMP+ KDP+K+GNLRIKF+IKFP
Sbjct: 294 NYEHVVPGEGMPLPKDPTKKGNLRIKFDIKFP 325
>ref|NP_187503.1| putative heat shock protein; protein id: At3g08910.1, supported by
cDNA: 96785. [Arabidopsis thaliana]
gi|6403504|gb|AAF07844.1|AC010871_20 putative heat shock
protein [Arabidopsis thaliana]
Length = 323
Score = 131 bits (330), Expect = 4e-30
Identities = 64/93 (68%), Positives = 76/93 (80%)
Frame = -2
Query: 531 DIVFIVDEKPHNVFTRDGNDLVVTQKISLTEDEALTGFTFPLTTLDGRCLPIAINNGTDP 352
D+VFIVDEKPH VF RDGNDLV+TQKI L E ALTG+T ++TLDGR + + INN P
Sbjct: 216 DLVFIVDEKPHAVFKRDGNDLVMTQKIPLVE--ALTGYTAQVSTLDGRSVTVPINNVISP 273
Query: 351 NYEKVITGEGMPISKDPSKRGNLRIKFNIKFPS 253
+YE+V+ GEGMPI KDPSK+GNLRIKF +KFPS
Sbjct: 274 SYEEVVKGEGMPIPKDPSKKGNLRIKFTVKFPS 306
>gb|AAM67147.1| putative heat shock protein [Arabidopsis thaliana]
Length = 323
Score = 131 bits (330), Expect = 4e-30
Identities = 64/93 (68%), Positives = 76/93 (80%)
Frame = -2
Query: 531 DIVFIVDEKPHNVFTRDGNDLVVTQKISLTEDEALTGFTFPLTTLDGRCLPIAINNGTDP 352
D+VFIVDEKPH VF RDGNDLV+TQKI L E ALTG+T ++TLDGR + + INN P
Sbjct: 216 DLVFIVDEKPHAVFKRDGNDLVMTQKIPLVE--ALTGYTAQVSTLDGRSVTVPINNVISP 273
Query: 351 NYEKVITGEGMPISKDPSKRGNLRIKFNIKFPS 253
+YE+V+ GEGMPI KDPSK+GNLRIKF +KFPS
Sbjct: 274 SYEEVVKGEGMPIPKDPSKKGNLRIKFTVKFPS 306
>ref|NP_195759.1| heat shock protein 40-like; protein id: At5g01390.1, supported by
cDNA: 114622. [Arabidopsis thaliana]
gi|11277166|pir||T48161 heat shock protein 40-like -
Arabidopsis thaliana gi|7320717|emb|CAB81922.1| heat
shock protein 40-like [Arabidopsis thaliana]
gi|21536897|gb|AAM61229.1| heat shock protein 40-like
[Arabidopsis thaliana] gi|26453020|dbj|BAC43586.1|
putative heat shock protein 40 [Arabidopsis thaliana]
gi|28973355|gb|AAO64002.1| putative heat shock protein
40 [Arabidopsis thaliana]
Length = 335
Score = 130 bits (327), Expect = 1e-29
Identities = 64/93 (68%), Positives = 76/93 (80%)
Frame = -2
Query: 531 DIVFIVDEKPHNVFTRDGNDLVVTQKISLTEDEALTGFTFPLTTLDGRCLPIAINNGTDP 352
D+VFIVDEKPH VF RDGNDLVV QKISL + ALTG+T +TTLDGR L + +NN P
Sbjct: 229 DLVFIVDEKPHPVFKRDGNDLVVMQKISLVD--ALTGYTAQVTTLDGRTLTVPVNNVISP 286
Query: 351 NYEKVITGEGMPISKDPSKRGNLRIKFNIKFPS 253
+YE+V+ GEGMPI KDPS++GNLRI+F IKFPS
Sbjct: 287 SYEEVVKGEGMPIPKDPSRKGNLRIRFIIKFPS 319
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 484,234,180
Number of Sequences: 1393205
Number of extensions: 11019181
Number of successful extensions: 26089
Number of sequences better than 10.0: 288
Number of HSP's better than 10.0 without gapping: 24751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25832
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17596710992
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
