Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002514A_C01 KMC002514A_c01
(702 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P83372|CISY_FRAAN Citrate synthase, mitochondrial precursor 120 2e-26
pir||T09334 citrate (si)-synthase (EC 4.1.3.7), mitochondrial - ... 120 2e-26
gb|AAG28777.1|AF302906_1 citrate synthase [Oryza sativa] 118 9e-26
dbj|BAA82390.1| ESTs C96653(C10531),C96654(C10531),C28571(C61641... 118 9e-26
ref|NP_566016.1| citrate synthase; protein id: At2g44350.1, supp... 117 1e-25
>sp|P83372|CISY_FRAAN Citrate synthase, mitochondrial precursor
Length = 469
Score = 120 bits (301), Expect = 2e-26
Identities = 55/67 (82%), Positives = 62/67 (92%)
Frame = -1
Query: 702 KVKNPWPNVDAHSGVLLNYYGLTEENYYTVLFGVARSIGVGPQLIWDRALGMALERPKSV 523
KVKNPWPNVDAHSGVLLN++GLTE Y+TVLFGV+RSIG+G QLIWDRALG+ LERPKSV
Sbjct: 396 KVKNPWPNVDAHSGVLLNHFGLTEARYFTVLFGVSRSIGIGSQLIWDRALGLPLERPKSV 455
Query: 522 TLEKLES 502
T+E LES
Sbjct: 456 TMESLES 462
>pir||T09334 citrate (si)-synthase (EC 4.1.3.7), mitochondrial - western balsam
poplar x cottonwood gi|1648926|emb|CAA59009.1| citrate
(si)-synthase [Populus balsamifera subsp. trichocarpa x
Populus deltoides]
Length = 339
Score = 120 bits (300), Expect = 2e-26
Identities = 56/67 (83%), Positives = 61/67 (90%)
Frame = -1
Query: 702 KVKNPWPNVDAHSGVLLNYYGLTEENYYTVLFGVARSIGVGPQLIWDRALGMALERPKSV 523
KVKNPWPNVDAHSGVLLNYYGLTE YYTVLFGV+RSIG+ QLIWDRALG+ LERPKSV
Sbjct: 265 KVKNPWPNVDAHSGVLLNYYGLTEARYYTVLFGVSRSIGICSQLIWDRALGLPLERPKSV 324
Query: 522 TLEKLES 502
T+E LE+
Sbjct: 325 TMELLEN 331
>gb|AAG28777.1|AF302906_1 citrate synthase [Oryza sativa]
Length = 472
Score = 118 bits (295), Expect = 9e-26
Identities = 54/67 (80%), Positives = 62/67 (91%)
Frame = -1
Query: 702 KVKNPWPNVDAHSGVLLNYYGLTEENYYTVLFGVARSIGVGPQLIWDRALGMALERPKSV 523
KVKNPWPNVDAHSGVLLN++GL+E YYTVLFGV+RSIG+G QLIWDRALG+ LERPKSV
Sbjct: 399 KVKNPWPNVDAHSGVLLNHFGLSEARYYTVLFGVSRSIGIGSQLIWDRALGLPLERPKSV 458
Query: 522 TLEKLES 502
T+E LE+
Sbjct: 459 TMEWLEN 465
>dbj|BAA82390.1| ESTs C96653(C10531),C96654(C10531),C28571(C61641) correspond to a
region of the predicted gene.~Similar to citrate
synthetase. (AC004521) [Oryza sativa (japonica
cultivar-group)]
Length = 493
Score = 118 bits (295), Expect = 9e-26
Identities = 54/67 (80%), Positives = 62/67 (91%)
Frame = -1
Query: 702 KVKNPWPNVDAHSGVLLNYYGLTEENYYTVLFGVARSIGVGPQLIWDRALGMALERPKSV 523
KVKNPWPNVDAHSGVLLN++GL+E YYTVLFGV+RSIG+G QLIWDRALG+ LERPKSV
Sbjct: 420 KVKNPWPNVDAHSGVLLNHFGLSEARYYTVLFGVSRSIGIGSQLIWDRALGLPLERPKSV 479
Query: 522 TLEKLES 502
T+E LE+
Sbjct: 480 TMEWLEN 486
>ref|NP_566016.1| citrate synthase; protein id: At2g44350.1, supported by cDNA:
16528., supported by cDNA: gi_14423561 [Arabidopsis
thaliana] gi|27735166|sp|P20115|CISY_ARATH Citrate
synthase, mitochondrial precursor
gi|14423562|gb|AAK62463.1|AF387018_1 citrate synthase
[Arabidopsis thaliana] gi|20197191|gb|AAC16084.2|
citrate synthase [Arabidopsis thaliana]
Length = 473
Score = 117 bits (294), Expect = 1e-25
Identities = 54/67 (80%), Positives = 62/67 (91%)
Frame = -1
Query: 702 KVKNPWPNVDAHSGVLLNYYGLTEENYYTVLFGVARSIGVGPQLIWDRALGMALERPKSV 523
KVKNPWPNVDAHSGVLLN+YGLTE YYTVLFGV+RS+G+ QLIWDRALG+ALERPKSV
Sbjct: 399 KVKNPWPNVDAHSGVLLNHYGLTEARYYTVLFGVSRSLGICSQLIWDRALGLALERPKSV 458
Query: 522 TLEKLES 502
T++ LE+
Sbjct: 459 TMDWLEA 465
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 628,981,744
Number of Sequences: 1393205
Number of extensions: 14176692
Number of successful extensions: 31561
Number of sequences better than 10.0: 181
Number of HSP's better than 10.0 without gapping: 30595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31510
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 32250355128
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
