Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002513A_C01 KMC002513A_c01
(567 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G96691 hypothetical protein T12I7.4 [imported] - Arabidopsi... 126 1e-28
ref|NP_564879.1| expressed protein; protein id: At1g66590.1, sup... 126 1e-28
ref|NP_177133.1| hypothetical protein; protein id: At1g69750.1 [... 126 1e-28
gb|AAM63032.1| unknown [Arabidopsis thaliana] 126 1e-28
ref|XP_221972.1| similar to Hypothetical protein F45H11.5 [Caeno... 67 2e-10
>pir||G96691 hypothetical protein T12I7.4 [imported] - Arabidopsis thaliana
gi|12322293|gb|AAG51175.1|AC079285_8 hypothetical
protein [Arabidopsis thaliana]
Length = 135
Score = 126 bits (317), Expect(2) = 1e-28
Identities = 57/68 (83%), Positives = 61/68 (88%)
Frame = -2
Query: 566 GGAFGGNRGLRPMPPEKGIFPLDHLHLCDLEKKEYLSCLKTAGNKSENCRELSKKYLQCR 387
GGAFGGNRGLRP+PPEKGIFPLDHLH CD EKKEYL CLK++ +KSE CR LSKKYLQCR
Sbjct: 41 GGAFGGNRGLRPIPPEKGIFPLDHLHECDAEKKEYLGCLKSSAHKSEQCRHLSKKYLQCR 100
Query: 386 MEKNLMAK 363
M KNLMAK
Sbjct: 101 MAKNLMAK 108
Score = 21.6 bits (44), Expect(2) = 1e-28
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -1
Query: 360 QDLAELGFKG 331
QD+AELGF G
Sbjct: 109 QDMAELGFSG 118
>ref|NP_564879.1| expressed protein; protein id: At1g66590.1, supported by cDNA:
18550. [Arabidopsis thaliana]
Length = 113
Score = 126 bits (317), Expect(2) = 1e-28
Identities = 57/68 (83%), Positives = 61/68 (88%)
Frame = -2
Query: 566 GGAFGGNRGLRPMPPEKGIFPLDHLHLCDLEKKEYLSCLKTAGNKSENCRELSKKYLQCR 387
GGAFGGNRGLRP+PPEKGIFPLDHLH CD EKKEYL CLK++ +KSE CR LSKKYLQCR
Sbjct: 19 GGAFGGNRGLRPIPPEKGIFPLDHLHECDAEKKEYLGCLKSSAHKSEQCRHLSKKYLQCR 78
Query: 386 MEKNLMAK 363
M KNLMAK
Sbjct: 79 MAKNLMAK 86
Score = 21.6 bits (44), Expect(2) = 1e-28
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -1
Query: 360 QDLAELGFKG 331
QD+AELGF G
Sbjct: 87 QDMAELGFSG 96
>ref|NP_177133.1| hypothetical protein; protein id: At1g69750.1 [Arabidopsis
thaliana] gi|25404834|pir||E96719 hypothetical protein
T6C23.5 [imported] - Arabidopsis thaliana
gi|12325196|gb|AAG52547.1|AC013289_14 hypothetical
protein; 34550-33586 [Arabidopsis thaliana]
gi|26452002|dbj|BAC43091.1| unknown protein [Arabidopsis
thaliana] gi|28416811|gb|AAO42936.1| At1g66590
[Arabidopsis thaliana]
Length = 98
Score = 126 bits (317), Expect(2) = 1e-28
Identities = 57/68 (83%), Positives = 61/68 (88%)
Frame = -2
Query: 566 GGAFGGNRGLRPMPPEKGIFPLDHLHLCDLEKKEYLSCLKTAGNKSENCRELSKKYLQCR 387
GGAFGGNRGLRP+PPEKGIFPLDHLH CD EKKEYL CLK++ +KSE CR LSKKYLQCR
Sbjct: 4 GGAFGGNRGLRPIPPEKGIFPLDHLHECDAEKKEYLGCLKSSAHKSEQCRHLSKKYLQCR 63
Query: 386 MEKNLMAK 363
M KNLMAK
Sbjct: 64 MAKNLMAK 71
Score = 21.6 bits (44), Expect(2) = 1e-28
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -1
Query: 360 QDLAELGFKG 331
QD+AELGF G
Sbjct: 72 QDMAELGFSG 81
>gb|AAM63032.1| unknown [Arabidopsis thaliana]
Length = 112
Score = 126 bits (317), Expect(2) = 1e-28
Identities = 57/68 (83%), Positives = 61/68 (88%)
Frame = -2
Query: 566 GGAFGGNRGLRPMPPEKGIFPLDHLHLCDLEKKEYLSCLKTAGNKSENCRELSKKYLQCR 387
GGAFGGNRGLRP+PPEKGIFPLDHLH CD EKKEYL CLK++ +KSE CR LSKKYLQCR
Sbjct: 18 GGAFGGNRGLRPIPPEKGIFPLDHLHECDAEKKEYLGCLKSSAHKSEQCRHLSKKYLQCR 77
Query: 386 MEKNLMAK 363
M KNLMAK
Sbjct: 78 MAKNLMAK 85
Score = 21.6 bits (44), Expect(2) = 1e-28
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -1
Query: 360 QDLAELGFKG 331
QD+AELGF G
Sbjct: 86 QDMAELGFSG 95
>ref|XP_221972.1| similar to Hypothetical protein F45H11.5 [Caenorhabditis elegans]
[Rattus norvegicus]
Length = 92
Score = 67.0 bits (162), Expect = 2e-10
Identities = 33/83 (39%), Positives = 49/83 (58%)
Frame = -2
Query: 551 GNRGLRPMPPEKGIFPLDHLHLCDLEKKEYLSCLKTAGNKSENCRELSKKYLQCRMEKNL 372
G + +P PP+KG FPLDH C K++++ CL+ ++ CR SK+YL CRM++ L
Sbjct: 8 GTKSFQPRPPDKGSFPLDHFGECKSFKEKFMKCLRDKNYENALCRNESKEYLMCRMQRQL 67
Query: 371 MAKAKTWRNLVLREIM*KLLEGK 303
MA + L R+IM + E K
Sbjct: 68 MA-PEPLEKLGFRDIMEEKPEAK 89
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 500,972,692
Number of Sequences: 1393205
Number of extensions: 10875259
Number of successful extensions: 22736
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 22087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22727
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
