Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002511A_C01 KMC002511A_c01
(563 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_173554.1| hypothetical protein; protein id: At1g21320.1 [... 61 8e-09
pir||C86346 F16F4.3 protein - Arabidopsis thaliana gi|8920632|gb... 61 1e-08
emb|CAD48198.1| RNA-binding protein [Medicago truncatula] 59 5e-08
dbj|BAC42194.1| unknown protein [Arabidopsis thaliana] 58 7e-08
dbj|BAC24834.1| OSJNBa0038F22.13 [Oryza sativa (japonica cultiva... 55 5e-07
>ref|NP_173554.1| hypothetical protein; protein id: At1g21320.1 [Arabidopsis
thaliana]
Length = 381
Score = 61.2 bits (147), Expect = 8e-09
Identities = 29/59 (49%), Positives = 40/59 (67%)
Frame = -1
Query: 554 RRSGDKAMVLCFVEFDDSKCALTAMEALQGYKFDDKKPDSRTLKIQFAHFPFRPPADNG 378
+RSGD VLCFV+F++S CA TA+ ALQ Y+ D+ +PDS+ L++QF P P G
Sbjct: 309 QRSGDPT-VLCFVDFENSACAATALSALQDYRMDEDEPDSKILRLQFFRNPGPRPGQRG 366
>pir||C86346 F16F4.3 protein - Arabidopsis thaliana
gi|8920632|gb|AAF81354.1|AC036104_3 Contains weak
similarity to bab503 major core protein from Simian
T-cell lymphotrophic virus type 1 gb|AF230486.
[Arabidopsis thaliana]
Length = 430
Score = 60.8 bits (146), Expect = 1e-08
Identities = 29/58 (50%), Positives = 39/58 (67%)
Frame = -1
Query: 551 RSGDKAMVLCFVEFDDSKCALTAMEALQGYKFDDKKPDSRTLKIQFAHFPFRPPADNG 378
RSGD VLCFV+F++S CA TA+ ALQ Y+ D+ +PDS+ L++QF P P G
Sbjct: 339 RSGDPT-VLCFVDFENSACAATALSALQDYRMDEDEPDSKILRLQFFRNPGPRPGQRG 395
>emb|CAD48198.1| RNA-binding protein [Medicago truncatula]
Length = 261
Score = 58.5 bits (140), Expect = 5e-08
Identities = 26/54 (48%), Positives = 38/54 (70%)
Frame = -1
Query: 563 KEPRRSGDKAMVLCFVEFDDSKCALTAMEALQGYKFDDKKPDSRTLKIQFAHFP 402
KE + GD ++LCFV+F + CA TA+ ALQGYK D+ P+S L++QF+ +P
Sbjct: 185 KEAKHRGDP-LILCFVDFANPACAATALSALQGYKVDEINPESSHLRLQFSRYP 237
>dbj|BAC42194.1| unknown protein [Arabidopsis thaliana]
Length = 156
Score = 58.2 bits (139), Expect = 7e-08
Identities = 27/58 (46%), Positives = 39/58 (66%)
Frame = -1
Query: 551 RSGDKAMVLCFVEFDDSKCALTAMEALQGYKFDDKKPDSRTLKIQFAHFPFRPPADNG 378
R+GD +VLCFV+F + CA TA+ ALQGY+ D+ + DS+ L++QF+ P P G
Sbjct: 98 RNGDP-IVLCFVDFTNPACAATALSALQGYRMDENESDSKFLRLQFSRKPGSRPGQRG 154
>dbj|BAC24834.1| OSJNBa0038F22.13 [Oryza sativa (japonica cultivar-group)]
Length = 293
Score = 55.5 bits (132), Expect = 5e-07
Identities = 26/53 (49%), Positives = 36/53 (67%)
Frame = -1
Query: 563 KEPRRSGDKAMVLCFVEFDDSKCALTAMEALQGYKFDDKKPDSRTLKIQFAHF 405
KE R G ++LCFV+F+ + A AM+ALQGYKFD+ +S L++QFA F
Sbjct: 225 KEARHPGGDPILLCFVDFETASQAAIAMDALQGYKFDEHDRNSPHLRLQFARF 277
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 474,528,281
Number of Sequences: 1393205
Number of extensions: 9584024
Number of successful extensions: 18829
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 18328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18827
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
