Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002510A_C01 KMC002510A_c01
(529 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S20074 promastigote surface antigen P2 (clone 4.6) precurso... 36 0.32
ref|NP_649481.1| CG12586-PA [Drosophila melanogaster] gi|2317054... 35 0.54
emb|CAC83674.1| mucin 5 [Homo sapiens] 35 0.71
ref|XP_223497.1| similar to Aggrecan core protein precursor (Car... 34 0.93
gb|AAD52672.1|AF178772_1 98kDa HDM allergen [Dermatophagoides fa... 33 1.6
>pir||S20074 promastigote surface antigen P2 (clone 4.6) precursor - Leishmania
major (fragment) gi|9583|emb|CAA40414.1| surface antigen
P2 [Leishmania major]
Length = 327
Score = 35.8 bits (81), Expect = 0.32
Identities = 37/127 (29%), Positives = 52/127 (40%), Gaps = 17/127 (13%)
Frame = +3
Query: 159 TTSLTPNQKHKIQSRTLKP--------KLHVSST*H**GIVTNRYSTRHVTTPTTIQNTG 314
TT+ T + + T KP KL ++T T +T TT TT T
Sbjct: 145 TTTTTTTKPPTTTTTTTKPPTTTTTTTKLPTTTT-----TTTKPPTTTTTTTTTTTTTTT 199
Query: 315 PTKLPISRAHSSQPPNSNETTG------FHIHLLPTTQTA---SQTRTGS*NPNRPVQS* 467
TK PI+ A +++PP + TT LPTT T ++ T + N P
Sbjct: 200 TTKPPITTATTTKPPTTTTTTTKPPTTITSTTKLPTTTTTEAPAEPTTTATPTNTPT--- 256
Query: 468 PTPQTTC 488
P P+T C
Sbjct: 257 PAPETEC 263
Score = 32.7 bits (73), Expect = 2.7
Identities = 29/117 (24%), Positives = 45/117 (37%)
Frame = +3
Query: 153 IQTTSLTPNQKHKIQSRTLKPKLHVSST*H**GIVTNRYSTRHVTTPTTIQNTGPTKLPI 332
+ TT+ T + + T KP ++T T +T TT T TKLP
Sbjct: 123 LPTTTTTTTKPPTTTTTTTKPPTTTTTT-------TKPPTTTTTTTKPPTTTTTTTKLPT 175
Query: 333 SRAHSSQPPNSNETTGFHIHLLPTTQTASQTRTGS*NPNRPVQS*PTPQTTCRSGSP 503
+ +++PP + T TT T + T T + P + P TT + P
Sbjct: 176 TTTTTTKPPTTTTT---------TTTTTTTTTTTTKPPITTATTTKPPTTTTTTTKP 223
>ref|NP_649481.1| CG12586-PA [Drosophila melanogaster] gi|23170542|gb|AAF52115.2|
CG12586-PA [Drosophila melanogaster]
Length = 559
Score = 35.0 bits (79), Expect = 0.54
Identities = 25/81 (30%), Positives = 32/81 (38%)
Frame = +3
Query: 258 TNRYSTRHVTTPTTIQNTGPTKLPISRAHSSQPPNSNETTGFHIHLLPTTQTASQTRTGS 437
T +T TT TT T PT P S ++ + +TTG PTT T + T
Sbjct: 216 TTTTATTTPTTTTTKTTTTPTTTPTSTPTTTTTTTTTQTTGTSTTTTPTTTTPTTTTPTI 275
Query: 438 *NPNRPVQS*PTPQTTCRSGS 500
P + T TT S S
Sbjct: 276 TTPTTTTPTTTTTTTTTTSTS 296
Score = 32.0 bits (71), Expect = 4.6
Identities = 20/72 (27%), Positives = 30/72 (40%)
Frame = +3
Query: 285 TTPTTIQNTGPTKLPISRAHSSQPPNSNETTGFHIHLLPTTQTASQTRTGS*NPNRPVQS 464
TTPTT + T T P + +++ + T PTT T T T + P +
Sbjct: 186 TTPTTTKTTPTTTTPTTTTQTTRTSTTTTPTTTTATTTPTTTTTKTTTTPTTTPTSTPTT 245
Query: 465 *PTPQTTCRSGS 500
T TT +G+
Sbjct: 246 TTTTTTTQTTGT 257
>emb|CAC83674.1| mucin 5 [Homo sapiens]
Length = 2448
Score = 34.7 bits (78), Expect = 0.71
Identities = 23/73 (31%), Positives = 31/73 (41%), Gaps = 1/73 (1%)
Frame = +3
Query: 285 TTPTTIQNTGPTKLPISRAHSSQPPNSNETTGFHIHLLPTTQTASQTRTG-S*NPNRPVQ 461
TTP+ + T T P +R S+ P + G +PTT T S T + P
Sbjct: 2338 TTPSPVLTTSTTSAPTTRTTSASPAGTTSGPGNTPSPVPTTSTISAPTTSITSAPTTSTT 2397
Query: 462 S*PTPQTTCRSGS 500
S PT TT G+
Sbjct: 2398 SAPTSSTTSGPGT 2410
>ref|XP_223497.1| similar to Aggrecan core protein precursor (Cartilage-specific
proteoglycan core protein) (CSPCP) (Chondroitin sulfate
proteoglycan core protein 1) [Rattus norvegicus]
Length = 434
Score = 34.3 bits (77), Expect = 0.93
Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 15/118 (12%)
Frame = +3
Query: 123 LHLRKVSKSYIQTTSLTPNQKHKIQSRTLKPKL----------HVSST*H**GIVTNRYS 272
LH + S ++ S TP+++ S+T P L +SST H + T++ +
Sbjct: 120 LHTTQTSPPHLTDISSTPHRQLLHTSQTSPPHLTTQTSPPHLTDISSTPHRHLLHTSQTA 179
Query: 273 TRHVTTPTT-----IQNTGPTKLPISRAHSSQPPNSNETTGFHIHLLPTTQTASQTRT 431
H+T ++ + +T P + + + +S P ++ ++ H HLL T+QTA T
Sbjct: 180 PPHLTDSSSTPHRHLLHTSPHRHLLHTSQTSPPHLTDSSSTPHRHLLHTSQTAPPHHT 237
Score = 32.7 bits (73), Expect = 2.7
Identities = 31/107 (28%), Positives = 49/107 (44%), Gaps = 2/107 (1%)
Frame = +3
Query: 123 LHLRKVSKSYIQTTSLTPNQKHKIQSRTLKPKL-HVSST*H**GIVTNRYSTRHVTTPTT 299
LH + S ++ S TP+++ ++T P L +SST H + T++ S H+TT T+
Sbjct: 98 LHTSQTSPPHLTDISSTPHRQLLHTTQTSPPHLTDISSTPHRQLLHTSQTSPPHLTTQTS 157
Query: 300 IQNTGPTKLPISRAHSSQPPNSNETTGF-HIHLLPTTQTASQTRTGS 437
PP+ + + H HLL T+QTA T S
Sbjct: 158 ------------------PPHLTDISSTPHRHLLHTSQTAPPHLTDS 186
>gb|AAD52672.1|AF178772_1 98kDa HDM allergen [Dermatophagoides farinae]
Length = 555
Score = 33.5 bits (75), Expect = 1.6
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = +3
Query: 285 TTPT-TIQNTGPTKLPISRAHSSQPPNSNETTGFHIHLLPTTQTASQTRTGS*NPNRPVQ 461
TTPT T T PT P + + ++ + TT PTT + T T + +P P
Sbjct: 418 TTPTPTTTPTTPTTTPTTPSPTTPTTTPSPTT-------PTTTPSPTTPTTTPSPTTPTP 470
Query: 462 S*PTPQTTCRSGSP 503
+ PTP T + SP
Sbjct: 471 TTPTPAPTTSTPSP 484
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 466,090,409
Number of Sequences: 1393205
Number of extensions: 10837051
Number of successful extensions: 30748
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 28318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30306
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17308240320
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
