Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002509A_C02 KMC002509A_c02
(695 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG29595.1|AF196288_1 Ser/Thr specific protein phosphatase 2A... 83 3e-15
gb|AAG29596.1|AF196289_1 Ser/Thr specific protein phosphatase 2A... 83 3e-15
ref|NP_564033.1| type 2A protein serine/threonine phosphatase 55... 80 3e-14
pir||B86312 type 2A protein serine/threonine phosphatase 55K reg... 80 3e-14
pir||T02952 probable protein phosphatase 2A B regulatory chain 5... 80 4e-14
>gb|AAG29595.1|AF196288_1 Ser/Thr specific protein phosphatase 2A B regulatory subunit alpha
isoform [Medicago sativa subsp. x varia]
Length = 515
Score = 83.2 bits (204), Expect = 3e-15
Identities = 37/38 (97%), Positives = 38/38 (99%)
Frame = -1
Query: 695 DANGNSFDFTTKLLHLAWHPTENSIACAAANSLYMYYA 582
DANGNSFDFTTKLLHLAWHP+ENSIACAAANSLYMYYA
Sbjct: 478 DANGNSFDFTTKLLHLAWHPSENSIACAAANSLYMYYA 515
>gb|AAG29596.1|AF196289_1 Ser/Thr specific protein phosphatase 2A B regulatory subunit beta
isoform [Medicago sativa subsp. x varia]
Length = 518
Score = 83.2 bits (204), Expect = 3e-15
Identities = 37/38 (97%), Positives = 38/38 (99%)
Frame = -1
Query: 695 DANGNSFDFTTKLLHLAWHPTENSIACAAANSLYMYYA 582
DANGNSFDFTTKLLHLAWHP+ENSIACAAANSLYMYYA
Sbjct: 481 DANGNSFDFTTKLLHLAWHPSENSIACAAANSLYMYYA 518
>ref|NP_564033.1| type 2A protein serine/threonine phosphatase 55 kDa B regulatory
subunit; protein id: At1g17720.1, supported by cDNA:
gi_1408459, supported by cDNA: gi_15010727 [Arabidopsis
thaliana] gi|1408460|gb|AAB60777.1| type 2A protein
serine/threonine phosphatase 55 kDa B regulatory subunit
gi|15010728|gb|AAK74023.1| At1g17720/F11A6_14
[Arabidopsis thaliana] gi|23308483|gb|AAN18211.1|
At1g17720/F11A6_14 [Arabidopsis thaliana]
Length = 501
Score = 80.1 bits (196), Expect = 3e-14
Identities = 34/38 (89%), Positives = 38/38 (99%)
Frame = -1
Query: 695 DANGNSFDFTTKLLHLAWHPTENSIACAAANSLYMYYA 582
+ANGN++DFTTKLLH+AWHPTENSIACAAANSLYMYYA
Sbjct: 464 EANGNAYDFTTKLLHMAWHPTENSIACAAANSLYMYYA 501
>pir||B86312 type 2A protein serine/threonine phosphatase 55K regulatory chain
F11A6.6 - Arabidopsis thaliana
gi|9802743|gb|AAF99812.1|AC034257_4 type 2A protein
serine/threonine phosphatase 55kDa B regulatory subunit
[Arabidopsis thaliana]
gi|13877637|gb|AAK43896.1|AF370519_1 type 2A protein
serine/threonine phosphatase 55kDa B regulatory subunit
[Arabidopsis thaliana] gi|25084199|gb|AAN72194.1| type
2A protein serine/threonine phosphatase 55kDa B
regulatory subunit [Arabidopsis thaliana]
Length = 500
Score = 80.1 bits (196), Expect = 3e-14
Identities = 34/38 (89%), Positives = 38/38 (99%)
Frame = -1
Query: 695 DANGNSFDFTTKLLHLAWHPTENSIACAAANSLYMYYA 582
+ANGN++DFTTKLLH+AWHPTENSIACAAANSLYMYYA
Sbjct: 463 EANGNAYDFTTKLLHMAWHPTENSIACAAANSLYMYYA 500
>pir||T02952 probable protein phosphatase 2A B regulatory chain 55K - rice
gi|3421413|gb|AAC32204.1| protein phosphatase 2A 55 kDa
B regulatory subunit [Oryza sativa]
gi|3421415|gb|AAC32205.1| protein phosphatase 2A 55 kDa
B regulatory subunit [Oryza sativa]
Length = 531
Score = 79.7 bits (195), Expect = 4e-14
Identities = 35/38 (92%), Positives = 37/38 (97%)
Frame = -1
Query: 695 DANGNSFDFTTKLLHLAWHPTENSIACAAANSLYMYYA 582
DANGNS+D +TKLLHLAWHPTENSIACAAANSLYMYYA
Sbjct: 490 DANGNSYDLSTKLLHLAWHPTENSIACAAANSLYMYYA 527
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 617,966,498
Number of Sequences: 1393205
Number of extensions: 13786098
Number of successful extensions: 37093
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 35716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37075
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31684559424
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
