Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002496A_C01 KMC002496A_c01
(718 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_126165.1| RIKEN cDNA 2700008N14 [Mus musculus] 34 1.8
dbj|BAC34024.1| unnamed protein product [Mus musculus] 34 1.8
gb|AAH48085.1| Similar to RIKEN cDNA 4933431N12 gene [Mus musculus] 34 1.8
ref|XP_109880.2| RIKEN cDNA 2700008N14 [Mus musculus] 34 1.8
dbj|BAC27640.1| unnamed protein product [Mus musculus] 34 1.8
>ref|XP_126165.1| RIKEN cDNA 2700008N14 [Mus musculus]
Length = 478
Score = 34.3 bits (77), Expect = 1.8
Identities = 18/54 (33%), Positives = 32/54 (58%)
Frame = -3
Query: 524 LDRGKEVIISSRSFSAGLSSLIISCCSYRIKSQYKFFLFHLPAAVICNQCKSAL 363
LD+ K+ +I+ + F G+S + + ++K+ YK HLP A+I + +SAL
Sbjct: 107 LDQNKDSLINFKEFVTGMSGMYHGDLTEKLKALYK---LHLPPALIPEEAESAL 157
>dbj|BAC34024.1| unnamed protein product [Mus musculus]
Length = 982
Score = 34.3 bits (77), Expect = 1.8
Identities = 18/54 (33%), Positives = 32/54 (58%)
Frame = -3
Query: 524 LDRGKEVIISSRSFSAGLSSLIISCCSYRIKSQYKFFLFHLPAAVICNQCKSAL 363
LD+ K+ +I+ + F G+S + + ++K+ YK HLP A+I + +SAL
Sbjct: 892 LDQNKDSLINFKEFVTGMSGMYHGDLTEKLKALYK---LHLPPALIPEEAESAL 942
>gb|AAH48085.1| Similar to RIKEN cDNA 4933431N12 gene [Mus musculus]
Length = 710
Score = 34.3 bits (77), Expect = 1.8
Identities = 18/54 (33%), Positives = 32/54 (58%)
Frame = -3
Query: 524 LDRGKEVIISSRSFSAGLSSLIISCCSYRIKSQYKFFLFHLPAAVICNQCKSAL 363
LD+ K+ +I+ + F G+S + + ++K+ YK HLP A+I + +SAL
Sbjct: 356 LDQNKDSLINFKEFVTGMSGMYHGDLTEKLKALYK---LHLPPALIPEEAESAL 406
>ref|XP_109880.2| RIKEN cDNA 2700008N14 [Mus musculus]
Length = 1017
Score = 34.3 bits (77), Expect = 1.8
Identities = 18/54 (33%), Positives = 32/54 (58%)
Frame = -3
Query: 524 LDRGKEVIISSRSFSAGLSSLIISCCSYRIKSQYKFFLFHLPAAVICNQCKSAL 363
LD+ K+ +I+ + F G+S + + ++K+ YK HLP A+I + +SAL
Sbjct: 663 LDQNKDSLINFKEFVTGMSGMYHGDLTEKLKALYK---LHLPPALIPEEAESAL 713
>dbj|BAC27640.1| unnamed protein product [Mus musculus]
Length = 376
Score = 34.3 bits (77), Expect = 1.8
Identities = 18/54 (33%), Positives = 32/54 (58%)
Frame = -3
Query: 524 LDRGKEVIISSRSFSAGLSSLIISCCSYRIKSQYKFFLFHLPAAVICNQCKSAL 363
LD+ K+ +I+ + F G+S + + ++K+ YK HLP A+I + +SAL
Sbjct: 5 LDQNKDSLINFKEFVTGMSGMYHGDLTEKLKALYK---LHLPPALIPEEAESAL 55
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 597,574,567
Number of Sequences: 1393205
Number of extensions: 12566850
Number of successful extensions: 24320
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 23452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24319
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 33217548346
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
