Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002494A_C01 KMC002494A_c01
(629 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD46017.1|AC007519_2 F16N3.2 [Arabidopsis thaliana] gi|26453... 86 4e-16
ref|NP_175203.1| hypothetical protein; protein id: At1g47720.1 [... 86 4e-16
ref|NP_568639.1| Expressed protein; protein id: At5g44785.1, sup... 74 1e-12
gb|AAM61481.1| unknown [Arabidopsis thaliana] 74 1e-12
dbj|BAC42861.1| unknown protein [Arabidopsis thaliana] 70 2e-11
>gb|AAD46017.1|AC007519_2 F16N3.2 [Arabidopsis thaliana] gi|26453224|dbj|BAC43686.1| unknown
protein [Arabidopsis thaliana]
gi|28950819|gb|AAO63333.1| At1g47720 [Arabidopsis
thaliana]
Length = 261
Score = 85.9 bits (211), Expect = 4e-16
Identities = 34/57 (59%), Positives = 42/57 (73%)
Frame = -3
Query: 555 LWQAFFANPGEWWDNRNKKRNPKAPDFKHKDTGEALWIEGRSTPSWVNSQLEIMDSR 385
LWQ FF+NP +WWDNR K+NPK PDFKHKDTGEALW+ P W+ +LE+ D +
Sbjct: 188 LWQVFFSNPYDWWDNRRNKKNPKQPDFKHKDTGEALWL-CSDLPDWITRRLELFDQK 243
>ref|NP_175203.1| hypothetical protein; protein id: At1g47720.1 [Arabidopsis
thaliana] gi|9802592|gb|AAF99794.1|AC012463_11 T2E6.21
[Arabidopsis thaliana]
Length = 272
Score = 85.9 bits (211), Expect = 4e-16
Identities = 34/57 (59%), Positives = 42/57 (73%)
Frame = -3
Query: 555 LWQAFFANPGEWWDNRNKKRNPKAPDFKHKDTGEALWIEGRSTPSWVNSQLEIMDSR 385
LWQ FF+NP +WWDNR K+NPK PDFKHKDTGEALW+ P W+ +LE+ D +
Sbjct: 199 LWQVFFSNPYDWWDNRRNKKNPKQPDFKHKDTGEALWL-CSDLPDWITRRLELFDQK 254
>ref|NP_568639.1| Expressed protein; protein id: At5g44785.1, supported by cDNA:
121432. [Arabidopsis thaliana]
gi|26452626|dbj|BAC43396.1| unknown protein [Arabidopsis
thaliana] gi|28973013|gb|AAO63831.1| unknown protein
[Arabidopsis thaliana]
Length = 440
Score = 74.3 bits (181), Expect = 1e-12
Identities = 31/52 (59%), Positives = 38/52 (72%)
Frame = -3
Query: 558 ELWQAFFANPGEWWDNRNKKRNPKAPDFKHKDTGEALWIEGRSTPSWVNSQL 403
E+W+ NP +WWDNR KRNPK PDFKHK+TGEALWI +P+W S+L
Sbjct: 378 EIWKNLVENPSKWWDNRLDKRNPKGPDFKHKETGEALWI--GDSPTWALSKL 427
Score = 62.4 bits (150), Expect = 5e-09
Identities = 28/52 (53%), Positives = 36/52 (68%)
Frame = -3
Query: 558 ELWQAFFANPGEWWDNRNKKRNPKAPDFKHKDTGEALWIEGRSTPSWVNSQL 403
E W+ NP +W DNR+ K N K PDFKHK+TGEALW+ ++P WV S+L
Sbjct: 292 ESWKDLVQNPDKWLDNRSDKTNVKYPDFKHKETGEALWM--TNSPIWVLSKL 341
Score = 42.4 bits (98), Expect = 0.005
Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = -3
Query: 552 WQAFFANPGEWWDNRNKKRN----PKAPDFKHKDTGEALWIEGRSTPSWVNSQLE 400
W+ NP EW D+R K N P PDFK K G +LW+ + P W +LE
Sbjct: 218 WKHLIENPKEWLDHRGNKANGLVKPGHPDFKMKVGGLSLWLS--TAPDWALLKLE 270
>gb|AAM61481.1| unknown [Arabidopsis thaliana]
Length = 440
Score = 74.3 bits (181), Expect = 1e-12
Identities = 31/52 (59%), Positives = 38/52 (72%)
Frame = -3
Query: 558 ELWQAFFANPGEWWDNRNKKRNPKAPDFKHKDTGEALWIEGRSTPSWVNSQL 403
E+W+ NP +WWDNR KRNPK PDFKHK+TGEALWI +P+W S+L
Sbjct: 378 EIWKNLVENPSKWWDNRLDKRNPKGPDFKHKETGEALWI--GDSPTWALSKL 427
Score = 62.4 bits (150), Expect = 5e-09
Identities = 28/52 (53%), Positives = 36/52 (68%)
Frame = -3
Query: 558 ELWQAFFANPGEWWDNRNKKRNPKAPDFKHKDTGEALWIEGRSTPSWVNSQL 403
E W+ NP +W DNR+ K N K PDFKHK+TGEALW+ ++P WV S+L
Sbjct: 292 ESWKDLVQNPDKWLDNRSDKTNVKYPDFKHKETGEALWM--TNSPIWVLSKL 341
Score = 42.4 bits (98), Expect = 0.005
Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = -3
Query: 552 WQAFFANPGEWWDNRNKKRN----PKAPDFKHKDTGEALWIEGRSTPSWVNSQLE 400
W+ NP EW D+R K N P PDFK K G +LW+ + P W +LE
Sbjct: 218 WKHLIENPKEWLDHRGNKANGLVKPGHPDFKMKVGGLSLWLS--TAPDWALLKLE 270
>dbj|BAC42861.1| unknown protein [Arabidopsis thaliana]
Length = 371
Score = 70.5 bits (171), Expect = 2e-11
Identities = 30/52 (57%), Positives = 37/52 (70%)
Frame = -3
Query: 558 ELWQAFFANPGEWWDNRNKKRNPKAPDFKHKDTGEALWIEGRSTPSWVNSQL 403
E W+ NP +WWDNR KRN KAPDFKHK+TGEALW+ +P+WV +L
Sbjct: 310 ESWKDLVQNPDKWWDNRIDKRNAKAPDFKHKETGEALWL--NESPTWVLPKL 359
Score = 52.4 bits (124), Expect = 5e-06
Identities = 24/55 (43%), Positives = 31/55 (55%), Gaps = 4/55 (7%)
Frame = -3
Query: 552 WQAFFANPGEWWDNRNKKRN----PKAPDFKHKDTGEALWIEGRSTPSWVNSQLE 400
W NP EWWD+R K N P+ PDFK KD+ +LW+ P+WV +LE
Sbjct: 237 WNHLIENPKEWWDHRENKVNGLVKPRHPDFKSKDSSFSLWL--NKAPNWVLPKLE 289
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 561,619,070
Number of Sequences: 1393205
Number of extensions: 12311129
Number of successful extensions: 29984
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 29005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29966
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25870486187
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
