Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002493A_C01 KMC002493A_c01
(643 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190364.1| aldose 1-epimerase - like protein; protein id: ... 245 3e-64
gb|AAM61410.1| aldose 1-epimerase-like protein [Arabidopsis thal... 245 3e-64
gb|AAL75737.1|AC091724_10 Putative aldose 1-epimerase - like pro... 203 2e-51
pir||T01933 probable aldose 1-epimerase (EC 5.1.3.3) - common to... 197 1e-49
dbj|BAC43284.1| putative aldose 1-epimerase [Arabidopsis thaliana] 196 3e-49
>ref|NP_190364.1| aldose 1-epimerase - like protein; protein id: At3g47800.1,
supported by cDNA: 119313., supported by cDNA:
gi_17381241 [Arabidopsis thaliana]
gi|7445540|pir||T07719 aldose 1-epimerase homolog
T23J7.130 - Arabidopsis thaliana
gi|4741197|emb|CAB41863.1| aldose 1-epimerase-like
protein [Arabidopsis thaliana]
gi|17381242|gb|AAL36040.1| AT3g47800/T23J7_130
[Arabidopsis thaliana] gi|28416453|gb|AAO42757.1|
At3g47800/T23J7_130 [Arabidopsis thaliana]
Length = 358
Score = 245 bits (626), Expect = 3e-64
Identities = 107/166 (64%), Positives = 134/166 (80%)
Frame = -1
Query: 640 HTYWNVRGHDSGDILSHTVQIFGSKITPVDDELIPTGEFQEVKGTPYDFLEPKEVGSQIH 461
HTYWN+ H+SG+ILSH +Q+ KITPVDD+LIPTGE + GTPYDFLEP+E+GS+IH
Sbjct: 192 HTYWNLHSHNSGNILSHKIQLLAGKITPVDDKLIPTGEITSITGTPYDFLEPREIGSRIH 251
Query: 460 DLPGLYDVNYVLDPSSPQHLRKVAIVKDNVSGRKLELWSNQPGVQYYTSGMLKDTKGKGG 281
+LPG YD+NYV+D +HLRK A+V + V+GRK+ELW+NQPGVQ+YTS M+K GKG
Sbjct: 252 ELPGGYDINYVIDGPIGKHLRKTAVVTEQVTGRKMELWTNQPGVQFYTSNMMKRVVGKGK 311
Query: 280 ATYHQYSGIALETQGFPDSVNHPNFPSMIVRPGQTYKHYMVYRFTA 143
A Y +Y G+ LETQGFPDSVNH NFPS IV PG++Y H M++RFTA
Sbjct: 312 AVYEKYGGLCLETQGFPDSVNHKNFPSQIVNPGESYLHVMLFRFTA 357
>gb|AAM61410.1| aldose 1-epimerase-like protein [Arabidopsis thaliana]
Length = 358
Score = 245 bits (626), Expect = 3e-64
Identities = 107/166 (64%), Positives = 134/166 (80%)
Frame = -1
Query: 640 HTYWNVRGHDSGDILSHTVQIFGSKITPVDDELIPTGEFQEVKGTPYDFLEPKEVGSQIH 461
HTYWN+ H+SG+ILSH +Q+ KITPVDD+LIPTGE + GTPYDFLEP+E+GS+IH
Sbjct: 192 HTYWNLHSHNSGNILSHKIQLLAGKITPVDDKLIPTGEITSIAGTPYDFLEPREIGSRIH 251
Query: 460 DLPGLYDVNYVLDPSSPQHLRKVAIVKDNVSGRKLELWSNQPGVQYYTSGMLKDTKGKGG 281
+LPG YD+NYV+D +HLRK A+V + V+GRK+ELW+NQPGVQ+YTS M+K GKG
Sbjct: 252 ELPGGYDINYVIDGPIGKHLRKTAVVTEEVTGRKMELWTNQPGVQFYTSNMMKRVVGKGK 311
Query: 280 ATYHQYSGIALETQGFPDSVNHPNFPSMIVRPGQTYKHYMVYRFTA 143
A Y +Y G+ LETQGFPDSVNH NFPS IV PG++Y H M++RFTA
Sbjct: 312 AVYEKYGGLCLETQGFPDSVNHKNFPSQIVNPGESYLHVMLFRFTA 357
>gb|AAL75737.1|AC091724_10 Putative aldose 1-epimerase - like protein [Oryza sativa]
gi|21306610|gb|AAM46059.1|AC122145_13 Putative aldose
1-epimerase - like protein [Oryza sativa (japonica
cultivar-group)]
Length = 343
Score = 203 bits (516), Expect = 2e-51
Identities = 88/168 (52%), Positives = 127/168 (75%), Gaps = 1/168 (0%)
Frame = -1
Query: 643 QHTYWNVRGHDSGDILSHTVQIFGSKITPVDDELIPTGEFQEVKGTPYDFLEPKEVGSQI 464
QHTYWN+ GH+SGD L H++QI+G ITPVD+ IPTGE VKGTP+DF ++G++I
Sbjct: 176 QHTYWNLAGHNSGDTLDHSIQIWGKHITPVDENTIPTGEIMPVKGTPFDFTTEHKIGARI 235
Query: 463 HDLPGLYDVNYVLDPSSPQH-LRKVAIVKDNVSGRKLELWSNQPGVQYYTSGMLKDTKGK 287
+D+PG YD NYVLD ++ L+ A +KD+ + R L+LW++ PG+Q+YT+ + GK
Sbjct: 236 NDVPGGYDHNYVLDSGEEKNGLKHAAKLKDSSNSRTLDLWTDAPGMQFYTANYVDGVTGK 295
Query: 286 GGATYHQYSGIALETQGFPDSVNHPNFPSMIVRPGQTYKHYMVYRFTA 143
GGA Y ++SG+ LETQGFP+++N PNFPS++V+PG+ YKH M++ F+A
Sbjct: 296 GGAVYGKHSGVCLETQGFPNAINQPNFPSVVVQPGEKYKHTMLFEFSA 343
>pir||T01933 probable aldose 1-epimerase (EC 5.1.3.3) - common tobacco
gi|2739168|gb|AAB94619.1| aldose-1-epimerase-like
protein [Nicotiana tabacum]
Length = 356
Score = 197 bits (501), Expect = 1e-49
Identities = 91/165 (55%), Positives = 122/165 (73%)
Frame = -1
Query: 640 HTYWNVRGHDSGDILSHTVQIFGSKITPVDDELIPTGEFQEVKGTPYDFLEPKEVGSQIH 461
H YWN+ GHDSGD+LS +QIFGS IT VD +LIPTGE +K TPYDFL+P++VGS+I+
Sbjct: 191 HPYWNIGGHDSGDVLSQVLQIFGSHITLVDKQLIPTGEIAPIKNTPYDFLKPRKVGSRIN 250
Query: 460 DLPGLYDVNYVLDPSSPQHLRKVAIVKDNVSGRKLELWSNQPGVQYYTSGMLKDTKGKGG 281
L YD+NYVLD S + ++ V IV D SGR +++ ++ PGVQ+YT+ + +TKGKGG
Sbjct: 251 KLKNGYDINYVLD--STEKMKPVGIVYDKKSGRVMDVQASSPGVQFYTANFVNNTKGKGG 308
Query: 280 ATYHQYSGIALETQGFPDSVNHPNFPSMIVRPGQTYKHYMVYRFT 146
Y +S ++LET FPD+VNHPNFPS IV PG+ Y H ++Y F+
Sbjct: 309 FVYQPHSALSLETLVFPDAVNHPNFPSTIVNPGEKYVHSVLYTFS 353
>dbj|BAC43284.1| putative aldose 1-epimerase [Arabidopsis thaliana]
Length = 298
Score = 196 bits (497), Expect = 3e-49
Identities = 90/165 (54%), Positives = 118/165 (70%)
Frame = -1
Query: 640 HTYWNVRGHDSGDILSHTVQIFGSKITPVDDELIPTGEFQEVKGTPYDFLEPKEVGSQIH 461
H+YWN+ GH+SGDILS +QI GS TPVD ELIPTG+ VKGT YDFL+ + + +
Sbjct: 132 HSYWNLGGHNSGDILSEEIQILGSGYTPVDGELIPTGKINPVKGTAYDFLQLRPIKDNMK 191
Query: 460 DLPGLYDVNYVLDPSSPQHLRKVAIVKDNVSGRKLELWSNQPGVQYYTSGMLKDTKGKGG 281
DL YD+NY LD + + +RK+ + D SGRK+EL NQ G+Q+YT GMLKD KGK G
Sbjct: 192 DLKTGYDINYCLDGKAKK-MRKIVELVDKKSGRKMELSGNQAGLQFYTGGMLKDVKGKNG 250
Query: 280 ATYHQYSGIALETQGFPDSVNHPNFPSMIVRPGQTYKHYMVYRFT 146
A Y + G+ LETQ +PD++NHP FPS IV PG+ YKH M+++F+
Sbjct: 251 AVYQAFGGLCLETQSYPDALNHPKFPSQIVEPGKKYKHTMLFKFS 295
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 602,303,159
Number of Sequences: 1393205
Number of extensions: 14161964
Number of successful extensions: 37864
Number of sequences better than 10.0: 127
Number of HSP's better than 10.0 without gapping: 36384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37714
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27007650415
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
