Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002487A_C01 KMC002487A_c01
(755 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P33629|TBA_PRUDU TUBULIN ALPHA CHAIN gi|486847|pir||S36232 tu... 274 1e-72
gb|AAG02564.1| alpha-tubulin [Daucus carota] 273 3e-72
ref|NP_193232.1| tubulin alpha-6 chain (TUA6); protein id: At4g1... 273 3e-72
ref|NP_171974.1| tubulin alpha-2/alpha-4 chain; protein id: At1g... 273 3e-72
sp|P46259|TBA1_PEA TUBULIN ALPHA-1 CHAIN gi|2119270|pir||S60233 ... 271 7e-72
>sp|P33629|TBA_PRUDU TUBULIN ALPHA CHAIN gi|486847|pir||S36232 tubulin alpha chain -
almond gi|20413|emb|CAA47635.1| alpha-tubulin [Prunus
dulcis]
Length = 450
Score = 274 bits (700), Expect = 1e-72
Identities = 131/140 (93%), Positives = 135/140 (95%)
Frame = -3
Query: 753 KYMACCLMYRGDVVPKDVNAAVGSIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAK 574
KYMACCLMYRGDVVPKDVNAAV +IKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAK
Sbjct: 311 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAK 370
Query: 573 VQRAVCMISNSTSVAEVFSRIDVKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEK 394
VQRAVCMISNSTSVAEVFSRID KFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct: 371 VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
Query: 393 DYEEVGAESGEGGDDDIEDY 334
DYEEVGAES EG DD+ +DY
Sbjct: 431 DYEEVGAESAEGEDDEGDDY 450
>gb|AAG02564.1| alpha-tubulin [Daucus carota]
Length = 451
Score = 273 bits (697), Expect = 3e-72
Identities = 133/141 (94%), Positives = 135/141 (95%), Gaps = 1/141 (0%)
Frame = -3
Query: 753 KYMACCLMYRGDVVPKDVNAAVGSIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAK 574
KYMACCLMYRGDVVPKDVNAAVG+IKTKRTIQFVDWCPTGFKCGINYQ PTVVPGGDLAK
Sbjct: 311 KYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQAPTVVPGGDLAK 370
Query: 573 VQRAVCMISNSTSVAEVFSRIDVKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEK 394
VQRAVCMISNSTSVAEVFSRID KFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct: 371 VQRAVCMISNSTSVAEVFSRIDTKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
Query: 393 DYEEVGAESGEGGDDDI-EDY 334
DYEEVGAES EG D+D EDY
Sbjct: 431 DYEEVGAESAEGDDEDEGEDY 451
>ref|NP_193232.1| tubulin alpha-6 chain (TUA6); protein id: At4g14960.1, supported by
cDNA: gi_16226461, supported by cDNA: gi_16604479,
supported by cDNA: gi_17529123, supported by cDNA:
gi_18958025 [Arabidopsis thaliana]
gi|267070|sp|P29511|TBA6_ARATH Tubulin alpha-6 chain
gi|282852|pir||JQ1597 tubulin alpha-6 chain -
Arabidopsis thaliana gi|166920|gb|AAA32892.1| TUA6
gi|2244853|emb|CAB10275.1| tubulin alpha-6 chain (TUA6)
[Arabidopsis thaliana] gi|7268242|emb|CAB78538.1|
tubulin alpha-6 chain (TUA6) [Arabidopsis thaliana]
gi|16604480|gb|AAL24246.1| AT4g14960/dl3520c
[Arabidopsis thaliana] gi|17529124|gb|AAL38788.1|
putative tubulin alpha-6 chain TUA6 [Arabidopsis
thaliana] gi|18958026|gb|AAL79586.1| AT4g14960/dl3520c
[Arabidopsis thaliana] gi|21436097|gb|AAM51249.1|
putative tubulin alpha-6 chain TUA6 [Arabidopsis
thaliana]
Length = 450
Score = 273 bits (697), Expect = 3e-72
Identities = 130/140 (92%), Positives = 135/140 (95%)
Frame = -3
Query: 753 KYMACCLMYRGDVVPKDVNAAVGSIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAK 574
KYMACCLMYRGDVVPKDVNAAVG+IKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAK
Sbjct: 311 KYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAK 370
Query: 573 VQRAVCMISNSTSVAEVFSRIDVKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEK 394
VQRAVCMISNSTSVAEVFSRID KFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct: 371 VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
Query: 393 DYEEVGAESGEGGDDDIEDY 334
DYEEVGAE G+ DD+ E+Y
Sbjct: 431 DYEEVGAEGGDDEDDEGEEY 450
>ref|NP_171974.1| tubulin alpha-2/alpha-4 chain; protein id: At1g04820.1, supported
by cDNA: gi_16648843 [Arabidopsis thaliana]
gi|15222856|ref|NP_175423.1| tubulin alpha-2/alpha-4
chain, putative; protein id: At1g50010.1, supported by
cDNA: gi_15294277, supported by cDNA: gi_17473672
[Arabidopsis thaliana] gi|267069|sp|P29510|TBA2_ARATH
Tubulin alpha-2/alpha-4 chain gi|320183|pir||JQ1594
tubulin alpha chain - Arabidopsis thaliana
gi|166914|gb|AAA32889.1| apha-2 tubulin
gi|166916|gb|AAA32890.1| alpha-4 tubulin
gi|7211983|gb|AAF40454.1|AC004809_12 Identical to the
alpha-4 tubulin (TUA4) gene from A. thaliana gb|M84697.
ESTs gb|T46564. gb|T04381, gb|T76028, gb|T21602,
gb|H37154 gb|H37663 and gb|T21719 come from this gene.
[Arabidopsis thaliana]
gi|8569104|gb|AAF76449.1|AC015445_16 Identical to
Tubulin Alpha-6 Chain from Arabidopsis thaliana
gi|267070 and contains a Tubulin PF|00091 domain. ESTs
gb|N37387, gb|N37805, gb|R90497, gb|T44684, gb|H36144,
gb|N38686, gb|AI994844, gb|R90689, gb|T04725, gb|H36928,
gb|N96479, gb|H36922, gb|R90670, gb|Z17980, gb|T4428,
gb|H36248, gb|N65408, gb|T46222 come from this gene
gi|15294278|gb|AAK95316.1|AF410330_1 At1g50010/F2J10_12
[Arabidopsis thaliana] gi|16648844|gb|AAL25612.1|
At1g04820/F13M7_26 [Arabidopsis thaliana]
gi|17473673|gb|AAL38293.1| Tubulin Alpha-6 Chain
[Arabidopsis thaliana] gi|22655354|gb|AAM98269.1|
At1g04820/F13M7_26 [Arabidopsis thaliana]
gi|23506129|gb|AAN31076.1| At1g50010/F2J10_12
[Arabidopsis thaliana]
Length = 450
Score = 273 bits (697), Expect = 3e-72
Identities = 130/140 (92%), Positives = 135/140 (95%)
Frame = -3
Query: 753 KYMACCLMYRGDVVPKDVNAAVGSIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAK 574
KYMACCLMYRGDVVPKDVNAAVG+IKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAK
Sbjct: 311 KYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAK 370
Query: 573 VQRAVCMISNSTSVAEVFSRIDVKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEK 394
VQRAVCMISNSTSVAEVFSRID KFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct: 371 VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
Query: 393 DYEEVGAESGEGGDDDIEDY 334
DYEEVGAE G+ DD+ E+Y
Sbjct: 431 DYEEVGAEGGDDEDDEGEEY 450
>sp|P46259|TBA1_PEA TUBULIN ALPHA-1 CHAIN gi|2119270|pir||S60233 tubulin alpha-1 chain
- garden pea gi|525332|gb|AAA79910.1| alpha-tubulin
Length = 452
Score = 271 bits (693), Expect = 7e-72
Identities = 131/142 (92%), Positives = 136/142 (95%), Gaps = 2/142 (1%)
Frame = -3
Query: 753 KYMACCLMYRGDVVPKDVNAAVGSIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAK 574
KYMACCLMYRGDVVPKDVNAAV +IKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAK
Sbjct: 311 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAK 370
Query: 573 VQRAVCMISNSTSVAEVFSRIDVKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEK 394
VQRAVCMISNSTSVAEVFSRID KFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct: 371 VQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
Query: 393 DYEEVGAESGEGGDDDI--EDY 334
DYEEVGAESG+G DD + E+Y
Sbjct: 431 DYEEVGAESGDGDDDGLGEEEY 452
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 675,276,871
Number of Sequences: 1393205
Number of extensions: 15492403
Number of successful extensions: 64239
Number of sequences better than 10.0: 1370
Number of HSP's better than 10.0 without gapping: 55926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62353
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 36877108757
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
