Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002486A_C01 KMC002486A_c01
(428 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_175036.1| histidine decarboxylase, putative; protein id: ... 128 2e-29
dbj|BAA78331.1| serine decarboxylase [Brassica napus] 126 7e-29
sp|P54772|DCHS_LYCES Histidine decarboxylase (HDC) (TOM92) gi|48... 95 2e-19
gb|AAG12476.2|AC037197_1 Putative histidine decarboxylase [Oryz... 94 5e-19
gb|ZP_00106716.1| hypothetical protein [Nostoc punctiforme] 60 5e-09
>ref|NP_175036.1| histidine decarboxylase, putative; protein id: At1g43710.1,
supported by cDNA: gi_13430641, supported by cDNA:
gi_15011301, supported by cDNA: gi_17907847 [Arabidopsis
thaliana] gi|25290978|pir||E96500 probable histidine
decarboxylase [imported] - Arabidopsis thaliana
gi|7523682|gb|AAF63121.1|AC009526_6 Putative histidine
decarboxylase [Arabidopsis thaliana]
gi|13430642|gb|AAK25943.1|AF360233_1 putative histidine
decarboxylase [Arabidopsis thaliana]
gi|14532818|gb|AAK64091.1| putative histidine
decarboxylase [Arabidopsis thaliana]
gi|15011302|gb|AAK77493.1|AF389349_1 serine
decarboxylase [Arabidopsis thaliana]
gi|17907848|dbj|BAB79456.1| histidine decarboxylase
[Arabidopsis thaliana] gi|17907853|dbj|BAB79457.1|
histidine decarboxylase [Arabidopsis thaliana]
Length = 482
Score = 128 bits (321), Expect = 2e-29
Identities = 58/77 (75%), Positives = 71/77 (91%)
Frame = -2
Query: 427 RNAHYFKDRLVEAGIGAMLNELSSTVVFERPHDEEFIRKWQLACKGNIAHVVVMPNITIE 248
RNAHY KDRL EAGI AMLNELSSTVVFERP DEEF+R+WQLAC+G+IAHVVVMP++TIE
Sbjct: 382 RNAHYLKDRLREAGISAMLNELSSTVVFERPKDEEFVRRWQLACQGDIAHVVVMPSVTIE 441
Query: 247 KLDDFLEELMQNRATWF 197
KLD+FL++L+++R W+
Sbjct: 442 KLDNFLKDLVKHRLIWY 458
Score = 32.0 bits (71), Expect = 1.8
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -3
Query: 234 F*RSLCRIVLPGFPDGKYTPYCIASDVGEKDCLCALHK 121
F + L + L + DG P C+AS+VG +C+C HK
Sbjct: 446 FLKDLVKHRLIWYEDGSQPP-CLASEVGTNNCICPAHK 482
>dbj|BAA78331.1| serine decarboxylase [Brassica napus]
Length = 490
Score = 126 bits (316), Expect = 7e-29
Identities = 56/77 (72%), Positives = 70/77 (90%)
Frame = -2
Query: 427 RNAHYFKDRLVEAGIGAMLNELSSTVVFERPHDEEFIRKWQLACKGNIAHVVVMPNITIE 248
RNAHY KDRL EAGI AMLNELSSTVVFERP +EEF+R+WQLAC+G+IAHVVVMP++T+E
Sbjct: 390 RNAHYLKDRLREAGISAMLNELSSTVVFERPKEEEFVRRWQLACQGDIAHVVVMPSVTVE 449
Query: 247 KLDDFLEELMQNRATWF 197
KLD FL++L+++R W+
Sbjct: 450 KLDHFLKDLVEHRLVWY 466
>sp|P54772|DCHS_LYCES Histidine decarboxylase (HDC) (TOM92) gi|481829|pir||S39554
histidine decarboxylase (EC 4.1.1.22) - tomato
gi|416534|emb|CAA50719.1| histidine decarboxylase
[Lycopersicon esculentum]
Length = 413
Score = 95.1 bits (235), Expect = 2e-19
Identities = 44/72 (61%), Positives = 53/72 (73%)
Frame = -2
Query: 424 NAHYFKDRLVEAGIGAMLNELSSTVVFERPHDEEFIRKWQLACKGNIAHVVVMPNITIEK 245
NA Y KDRL+EAGI MLN+ S TVVFERP D +FIR+W L C +AHVV+MP IT E
Sbjct: 310 NARYLKDRLLEAGISVMLNDFSITVVFERPCDHKFIRRWNLCCLRGMAHVVIMPGITRET 369
Query: 244 LDDFLEELMQNR 209
+D F ++LMQ R
Sbjct: 370 IDSFFKDLMQER 381
>gb|AAG12476.2|AC037197_1 Putative histidine decarboxylase [Oryza sativa]
gi|18542940|gb|AAL75763.1|AC069324_20 Putative histidine
decarboxylase [Oryza sativa]
Length = 467
Score = 93.6 bits (231), Expect = 5e-19
Identities = 42/76 (55%), Positives = 54/76 (70%)
Frame = -2
Query: 424 NAHYFKDRLVEAGIGAMLNELSSTVVFERPHDEEFIRKWQLACKGNIAHVVVMPNITIEK 245
NA Y + L + GI A N LS+ VVFERP DE + +WQLAC+GN+AH+VVMPN+T EK
Sbjct: 359 NARYLEVLLKQVGISASCNTLSNIVVFERPKDERIVCRWQLACEGNLAHIVVMPNVTFEK 418
Query: 244 LDDFLEELMQNRATWF 197
L F+EEL + R W+
Sbjct: 419 LTVFVEELAEKRKDWY 434
>gb|ZP_00106716.1| hypothetical protein [Nostoc punctiforme]
Length = 384
Score = 60.5 bits (145), Expect = 5e-09
Identities = 32/69 (46%), Positives = 43/69 (61%)
Frame = -2
Query: 424 NAHYFKDRLVEAGIGAMLNELSSTVVFERPHDEEFIRKWQLACKGNIAHVVVMPNITIEK 245
NA Y +L MLN S+TVVF++P + I+KWQLA N AH++VM NI EK
Sbjct: 297 NAQYLFQQLQIREYPCMLNNFSNTVVFQKP-SQRLIKKWQLAVFENWAHMIVMQNIVREK 355
Query: 244 LDDFLEELM 218
+D F+ EL+
Sbjct: 356 IDIFINELL 364
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 365,133,813
Number of Sequences: 1393205
Number of extensions: 7485258
Number of successful extensions: 19263
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 18471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19237
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 6822985368
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
