Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002483A_C01 KMC002483A_c01
(538 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_176915.1| unknown protein; protein id: At1g67480.1 [Arabi... 94 1e-18
pir||T02157 hypothetical protein T1F15.5 - Arabidopsis thaliana ... 94 1e-18
ref|NP_174062.1| hypothetical protein; protein id: At1g27420.1 [... 37 0.20
gb|AAF99736.1|AC004557_15 F17L21.21 [Arabidopsis thaliana] 37 0.20
ref|NP_760366.1| Ribonucleases G and E [Vibrio vulnificus CMCP6]... 33 2.8
>ref|NP_176915.1| unknown protein; protein id: At1g67480.1 [Arabidopsis thaliana]
gi|25404674|pir||B96698 unknown protein F12B7.3
[imported] - Arabidopsis thaliana
gi|12324672|gb|AAG52295.1|AC011020_2 unknown protein
[Arabidopsis thaliana]
Length = 376
Score = 94.0 bits (232), Expect = 1e-18
Identities = 43/70 (61%), Positives = 56/70 (79%)
Frame = -3
Query: 536 WKMVPVPLTGSTSIGFRFGILDGKLLLFSLEDEPAYKTLLYDPNAAPGKEWRTSEIKPSG 357
W++V +PL+GS+ GF+FG L GKLLLFS ++E TLLYDP+A+PG +W+TSEIK SG
Sbjct: 307 WEVVALPLSGSSRAGFQFGKLSGKLLLFSSQEETGQCTLLYDPDASPGTQWKTSEIKLSG 366
Query: 356 LCLCSVTIKA 327
C+CSVTI A
Sbjct: 367 SCVCSVTITA 376
>pir||T02157 hypothetical protein T1F15.5 - Arabidopsis thaliana
gi|3176664|gb|AAC18788.1|AAC18788 Contains similarity to
beta scruin gb|Z47541 from Limulus polyphemus. ESTs
gb|T04493 and gb|AA585955 come from this gene.
[Arabidopsis thaliana]
Length = 433
Score = 94.0 bits (232), Expect = 1e-18
Identities = 43/70 (61%), Positives = 56/70 (79%)
Frame = -3
Query: 536 WKMVPVPLTGSTSIGFRFGILDGKLLLFSLEDEPAYKTLLYDPNAAPGKEWRTSEIKPSG 357
W++V +PL+GS+ GF+FG L GKLLLFS ++E TLLYDP+A+PG +W+TSEIK SG
Sbjct: 364 WEVVALPLSGSSRAGFQFGKLSGKLLLFSSQEETGQCTLLYDPDASPGTQWKTSEIKLSG 423
Query: 356 LCLCSVTIKA 327
C+CSVTI A
Sbjct: 424 SCVCSVTITA 433
>ref|NP_174062.1| hypothetical protein; protein id: At1g27420.1 [Arabidopsis
thaliana]
Length = 346
Score = 36.6 bits (83), Expect = 0.20
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = -3
Query: 536 WKMVPVPLTGSTSIGFRFGILDGKLLLFSLEDEPAYKTLLYDPNAAPGKEWRT-SEIKPS 360
W V VP R G+ + K+LLFS ++TL+YD + G +WR +IKPS
Sbjct: 279 WSSVFVP-PREGGFWVRLGVWNNKVLLFSRVC--GHETLMYDLDKEKGSKWRVCDQIKPS 335
Query: 359 GLCLCSVTI 333
L SV I
Sbjct: 336 ASQLASVLI 344
>gb|AAF99736.1|AC004557_15 F17L21.21 [Arabidopsis thaliana]
Length = 360
Score = 36.6 bits (83), Expect = 0.20
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = -3
Query: 536 WKMVPVPLTGSTSIGFRFGILDGKLLLFSLEDEPAYKTLLYDPNAAPGKEWRT-SEIKPS 360
W V VP R G+ + K+LLFS ++TL+YD + G +WR +IKPS
Sbjct: 293 WSSVFVP-PREGGFWVRLGVWNNKVLLFSRVC--GHETLMYDLDKEKGSKWRVCDQIKPS 349
Query: 359 GLCLCSVTI 333
L SV I
Sbjct: 350 ASQLASVLI 358
>ref|NP_760366.1| Ribonucleases G and E [Vibrio vulnificus CMCP6]
gi|27360983|gb|AAO09893.1|AE016801_212 Ribonucleases G
and E [Vibrio vulnificus CMCP6]
Length = 489
Score = 32.7 bits (73), Expect = 2.8
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 12/92 (13%)
Frame = +3
Query: 102 DMITVTSKKHLIIEAYLLENALNK----------LQLFYIQTSTKL--KSDKHIIIETCS 245
D I ++S++H LENAL+K QL ++ + K +S +HI+ +C
Sbjct: 347 DFIDMSSEEHRKRVLTSLENALSKDRVKTNINGFTQLGLVEMTRKRTRESIEHILCSSCP 406
Query: 246 SLQS*ILVKTTKVLCYILNSEVPSVLSGLDSN 341
+ + VKT + +CY + E+ V D++
Sbjct: 407 TCEGRGSVKTVETVCYEILREITRVNRAYDAD 438
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 433,165,031
Number of Sequences: 1393205
Number of extensions: 8387377
Number of successful extensions: 19570
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 19102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19567
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
